PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32347
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YA
Protein Properties Length: 324aa    MW: 35118.7 Da    PI: 9.7127
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32347genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.7e-30160216158
                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                d p+YVNaKQy++I++RRq+Rak+   +kl +k rkpy+heSRh hAlrRpRg+gGrF
  Tp57577_TGAC_v2_mRNA32347 160 DGPIYVNAKQYHGIIRRRQSRAKAVLGQKL-IKRRKPYMHESRHLHALRRPRGCGGRF 216
                                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-34158219IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.189159219IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-25162216IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22162184IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22193216IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAMQTVYLKE HEGIAHNFVG QLSSGGTNNS STVPWWSGFG SQSVYGESGG QIKSFSLEPP  60
ISAVDQLAAS KQSMLGKGLT NHFTIFPDDF KMSGDAQKPH TAISLQSSLP DTPPRFELGF  120
NQPMICTKYP YADQFYGLIS TYGPQIPGRV MLPLNMTSDD GPIYVNAKQY HGIIRRRQSR  180
AKAVLGQKLI KRRKPYMHES RHLHALRRPR GCGGRFLNTK KSASGDDKAG SKVHKFGGQQ  240
LQCSGSQSSE LLESDVGALN SSKETNGSSP NISGSEVTSF YSSGNLDGFN INNLVSNVHS  300
SANMIDRXXX XXXXAGNCCN LKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-17162224466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174193RRRQSRAKAVLGQKLIKRRK
2174194RRRQSRAKAVLGQKLIKRRKP
3175194RRQSRAKAVLGQKLIKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32347
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182670.0JQ918267.1 Medicago truncatula nuclear transcription factor Y subunit A2 (NF-YA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450229.10.0nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_024626977.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A2K3PEP20.0A0A2K3PEP2_TRIPR; Nuclear transcription factor Y subunit A-10-like protein
STRINGXP_004494259.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-59nuclear factor Y, subunit A10