PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA32155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 17800 Da PI: 6.2613 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 25.3 | 4.3e-08 | 2 | 43 | 58 | 99 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++sl+yeA r+ +P +Ga+g+++ +q+ +++ +e +l+++ Tp57577_TGAC_v2_mRNA32155 2 FKSLLYEAAGRLVNPTHGALGLFWIGQWSRCEATVESVLTGS 43 79*******************************999988766 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence Send to blast |
VFKSLLYEAA GRLVNPTHGA LGLFWIGQWS RCEATVESVL TGSNINDVTT VDGQTSSGTL 60 IAENHVLPTT SDIRHVARGT NVDIKEKTQF KRAESIFKPK PRVGWADNAT LLKSILENGS 120 LKIVEASSMI EKELNGAAET QVNFELTLGF NCQSSNDKKS YDN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32155 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452375.1 | 6e-75 | LOB domain-containing protein 42 | ||||
TrEMBL | A0A2K3KZU4 | 1e-114 | A0A2K3KZU4_TRIPR; LOB domain protein | ||||
STRING | AES84556 | 4e-71 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14785 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68510.1 | 3e-17 | LOB domain-containing protein 42 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA32155 |