PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA32075

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C3H

Protein Properties

Length: 290aa MW: 32839.3 Da PI: 8.0686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA32075	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5e-08	73	95	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C++++r G C +Gd C F+Hg Tp57577_TGAC_v2_mRNA32075 73 GEVCPDYRR-GNCERGDACEFSHG 95 689****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.3E-6	70	96	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.399	70	97	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.38E-5	71	95	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	74	97	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.2E-6	74	95	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6	105	128	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MTTHPPTTTH HRXXXXXXXX XDEDPYSSDH FRMYEFKIRR CTRSRSHDWT DCPFAHPGEK 60 ARRRDPLRFQ YSGEVCPDYR RGNCERGDAC EFSHGVFECW LHPSRYRTEA CKDGKNCKRK 120 ICFFAHTTRQ LRVLLLPPPP SPTPQNNNKN CCSFCHCCSN SSSSSPTSIL LSGPHFSSSN 180 SPPLSPLSNS KSKGVHVLNE LIRSMESFNF GDDILHEVNS PVSASKLNWI NNNNNNSHNS 240 VANSSLGCGK YYNSSGSENF LKEKQSFRVV VDDDVVANPD FGWVNELLM*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA32075

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607493.1	1e-125	zinc finger CCCH domain-containing protein 61
Swissprot	Q9ZWA1	8e-74	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2Z6NU36	1e-125	A0A2Z6NU36_TRISU; Uncharacterized protein
STRING	AES89690	1e-125	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6261	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03790.1	5e-66	C3H family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA32075

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]