PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA32056
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 438aa    MW: 51091.9 Da    PI: 6.136
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA32056genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.81.6e-24100199186
                   trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                +Wt+ +v++Li a+ +++++ ++++             +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++++ +k+
  Tp57577_TGAC_v2_mRNA32056 100 KWTDTMVRLLIMAVYYIGDEAGTSElgtdnkkknngllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKG 183
                                7*********************9988888899999999********************************************** PP

                   trihelix  72 .tsessstcpyfdqle 86 
                                 +++++++ ++ d ++
  Tp57577_TGAC_v2_mRNA32056 184 tACRVVENQSLMDTMD 199
                                5599999999999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-2298224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MESNGIFPTI NNGFLAVENP SKQQNLQNQQ NPHTLQHHQM VSYDQPHQSI KQGYPYSSKT  60
NNNKPQQQIN LSDEDEPCFG ADEASIGDPK RKGSPWHRMK WTDTMVRLLI MAVYYIGDEA  120
GTSELGTDNK KKNNGLLQKK GKWKSVSKGM MEKGYYVSPQ QCEDKFNDLN KRYKRVNDIL  180
GKGTACRVVE NQSLMDTMDL PIKLKDEARK LLNSKHLFFR EMCAYHNSCG HVNNNNNLQQ  240
QSWTETETQP QHHQHQQPQQ QQPQQQCLHS SNGVGMLKLK GKSGEEEEDE DEEDEWEDDS  300
EEEEDENIEE DENVDHLRKK SKKVSSLVMQ QLSSEVMNVL QDGVKSSWEK KQWMKKRVVQ  360
LAEEQINYHV EAFEIEKQRL KWAKFSGNKE REMEKNKLEN ERRSLEIDRM VLLLRQKELE  420
LQNTQQMQQQ QQQHSST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA32056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450070.10.0probable serine/threonine-protein kinase irlF
TrEMBLA0A2K3MN360.0A0A2K3MN36_TRIPR; ABC transporter F family member 4-like protein
STRINGXP_004494130.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.16e-73sequence-specific DNA binding transcription factors