PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 652aa MW: 71498.1 Da PI: 6.8263 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.4 | 6.8e-28 | 198 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+il++m+v+ +t+e+v+SHLQkYRl Tp57577_TGAC_v2_mRNA3200 198 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDMMNVENITRENVASHLQKYRL 251 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.3 | 2.7e-26 | 14 | 122 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 vl vdD+p+ + +l+++l++ +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ Tp57577_TGAC_v2_mRNA3200 14 VLAVDDDPTCLLVLETLLRRCQY-HVTTTSQARTALTMLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSAYGDT 96 799********************.***************888888*******************87754.558************ PP HHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 84 edalealkaGakdflsKpfdpeelvk 109 +++ + ++ Ga d+l Kp+ eel + Tp57577_TGAC_v2_mRNA3200 97 KLVMKGISHGACDYLLKPVRLEELKN 122 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.4E-165 | 1 | 648 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.5E-43 | 11 | 148 | No hit | No description |
SuperFamily | SSF52172 | 2.28E-36 | 11 | 134 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 8.2E-33 | 12 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.303 | 13 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-23 | 14 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.24E-28 | 15 | 128 | No hit | No description |
PROSITE profile | PS51294 | 10.383 | 195 | 254 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-29 | 195 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-19 | 196 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-24 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-6 | 200 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MDDSGDRFPI GMRVLAVDDD PTCLLVLETL LRRCQYHVTT TSQARTALTM LRENKDKFDL 60 VISDVHMPDM DGFKLLELVG LEMDLPVIML SAYGDTKLVM KGISHGACDY LLKPVRLEEL 120 KNIWQHVIRK KKSDPKEKNK TSKLDKTTSE SGSGLRSAGA ENSDENGKLT KKRKDQDEDE 180 DEDKENGNDN EDPSAQKKPR VVWSVELHRK FVAAVNQLGI EKAVPKKILD MMNVENITRE 240 NVASHLQKYR LYLKRISCVA NQQASMVAAL GSADQSYLRM GGSGHFHNNA FRSFSPNGII 300 SNLNTPTGLN GHGFSPSGLL QLGQSQSFNN SSNDQLKFQP TITPVNQNIL QGMPMSIGFD 360 HLQNNSSKGV FPVQNLNTDV KPTFPIPNRF PDQIPKVTTS SSHPPSLGIS NNGLMLETHT 420 EGKHGGIGIG YGSSSSSVSS RHSDFSFSML DQGRHSDNWS SVVPLSGIQT NSFPSSDCFR 480 QTAIPPSDNM ASLPLQAGYP GGSLADVHSQ GSVFTNSPEY INGNLPFQGW EDRNQDATYH 540 SNITYGSINS LAPVNGAVVP RGQTTSNSTL HRNLDTKFCD PRQMKHAGFA DLTECSSSRQ 600 PRVNIVSQQK FSNNLGSLEY LASSMMEQEQ DKMKLLGGDF ICDSYSGGVS L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-26 | 194 | 257 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU019601 | 0.0 | CU019601.8 M.truncatula DNA sequence from clone MTH2-12A22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603312.1 | 0.0 | two-component response regulator ARR12 | ||||
Swissprot | A2X1N2 | 1e-135 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2K3P7Z1 | 0.0 | A0A2K3P7Z1_TRIPR; Two-component response regulator | ||||
STRING | AES73563 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-123 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3200 |