PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Trihelix | ||||||||
Protein Properties | Length: 572aa MW: 65912.9 Da PI: 6.2246 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.9 | 4.7e-17 | 102 | 181 | 2 | 84 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt..sessstcpyfd 83 Wt++evlaL+++r++me+++ + We+vs+k++e g++rs+++Ckek+e+ ++ + +i++++++++ ++ +++++ + Tp57577_TGAC_v2_mRNA31991 102 WTNDEVLALLKIRSSMENWFPDF-----TWEHVSRKLEEVGYKRSAEKCKEKFEEESRFFNNINNNQNQNQnpNNFGKNFRFVT 180 ********************998.....9***********************************99998862234445555555 PP trihelix 84 q 84 + Tp57577_TGAC_v2_mRNA31991 181 E 181 5 PP | |||||||
2 | trihelix | 94.4 | 1.1e-29 | 427 | 514 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k+evlaLi++r +++++ ++++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ ++kr s +s+tcpy Tp57577_TGAC_v2_mRNA31991 427 RWPKDEVLALINLRCNTNNEEKEANninNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKR-SLDSRTCPY 509 8**************99999888743449********************************************8.9999***** PP trihelix 82 fdqle 86 f+ l Tp57577_TGAC_v2_mRNA31991 510 FHLLS 514 **875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.5E-12 | 100 | 184 | No hit | No description |
PROSITE profile | PS50090 | 6.423 | 101 | 153 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.2E-18 | 426 | 514 | No hit | No description |
CDD | cd12203 | 4.38E-23 | 426 | 494 | No hit | No description |
PROSITE profile | PS50090 | 6.76 | 427 | 487 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MFDGVPDQFH QFITPRTSSS SLPLHLPFPL STPNNNTFPT FDPYNQQLPL QVQPNNLLHP 60 LHHHKNDEHK QQNNTTSTPS MNNFQIDERD QRQILPQLID PWTNDEVLAL LKIRSSMENW 120 FPDFTWEHVS RKLEEVGYKR SAEKCKEKFE EESRFFNNIN NNQNQNQNPN NFGKNFRFVT 180 ELEELYQGGG ENNSNQVGTQ KPNNVQDKMD RGEDSRNDDV LVTKKSEDEV FDKSTTNEER 240 KRKRGDNRFE VFKGFCESVV KKMMDQQEEM HNKLIEDMIK RDEEKFSREE AWKKQEMEKM 300 NKELELMAQE QAVAGDRQAN IIQFLNKFTT STNSSTSLAL IASSIQTFGI GKQDKSKVTS 360 NSSTLHSQNP NLENHDKTLQ PNPENPNSGN PSSTTTITTT TTALAITPHK NNAISSYSGE 420 KEDIGRRWPK DEVLALINLR CNTNNEEKEA NNINNKAPLW ERISQGMLEL GYKRSAKRCK 480 EKWENINKYF RKTKDANRKR SLDSRTCPYF HLLSNLYNQG KLVLQSDQKQ ESNNNNMNVA 540 EENVQEQATQ DEKQGGESSQ VGPAFAGDFT M* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31991 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135565 | 1e-148 | AC135565.18 Medicago truncatula clone mth2-19b12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591003.1 | 0.0 | trihelix transcription factor GTL2 | ||||
TrEMBL | G7I6V9 | 0.0 | G7I6V9_MEDTR; Putative transcription factor MYB family | ||||
STRING | AES61254 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 2e-84 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31991 |