PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HRT-like | ||||||||
Protein Properties | Length: 463aa MW: 52913.1 Da PI: 10.3259 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 60.9 | 2e-19 | 344 | 374 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil dGs+C+r+Pv++R RC+eHKGmRi Tp57577_TGAC_v2_mRNA31658 344 ICGVILADGSICQRPPVEKRVRCAEHKGMRI 374 8*****************************7 PP | |||||||
2 | HRT-like | 62.1 | 8e-20 | 427 | 457 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri Tp57577_TGAC_v2_mRNA31658 427 ICGIILDDGSTCTRQPVKGRKRCHEHKGKRI 457 8*****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
LFLSYLSPSS PFPSLYRNCH RNNGGFISNF PETXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVVYL GKADNVRARL 180 QRYGRTGAHL SNISSSDDSS LQTGRSLFQD IFSQGFPIVY RWAPMQNEGD ALRTEAQLLS 240 TFDYAWNTIS NGTRRPDDIL QMLNKLASGT RTFSDVTKLL LPFTQRKVGI PIKSSKLPLT 300 DDKLDEADNG SYNILSRVFK FNRSRPRIVV QDTTSRAIHE NAKICGVILA DGSICQRPPV 360 EKRVRCAEHK GMRIKVSTAK AIRAPKLELE TIVGNAYRYQ NVSQDVEEPP QRKVESHVQE 420 SFTKTLICGI ILDDGSTCTR QPVKGRKRCH EHKGKRIRGN QK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31658 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147961 | 0.0 | AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003625016.2 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A2K3NJ71 | 0.0 | A0A2K3NJ71_TRIPR; Uncharacterized protein (Fragment) | ||||
STRING | XP_004493411.1 | 1e-180 | (Cicer arietinum) | ||||
STRING | AES81234 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9409 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 7e-59 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31658 |