PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31658

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HRT-like

Protein Properties

Length: 463aa MW: 52913.1 Da PI: 10.3259

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31658	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	60.9	2e-19	344	374	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil dGs+C+r+Pv++R RC+eHKGmRi Tp57577_TGAC_v2_mRNA31658 344 ICGVILADGSICQRPPVEKRVRCAEHKGMRI 374 8*****************************7 PP
2	HRT-like	62.1	8e-20	427	457	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri Tp57577_TGAC_v2_mRNA31658 427 ICGIILDDGSTCTRQPVKGRKRCHEHKGKRI 457 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
LFLSYLSPSS PFPSLYRNCH RNNGGFISNF PETXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVVYL GKADNVRARL 180 QRYGRTGAHL SNISSSDDSS LQTGRSLFQD IFSQGFPIVY RWAPMQNEGD ALRTEAQLLS 240 TFDYAWNTIS NGTRRPDDIL QMLNKLASGT RTFSDVTKLL LPFTQRKVGI PIKSSKLPLT 300 DDKLDEADNG SYNILSRVFK FNRSRPRIVV QDTTSRAIHE NAKICGVILA DGSICQRPPV 360 EKRVRCAEHK GMRIKVSTAK AIRAPKLELE TIVGNAYRYQ NVSQDVEEPP QRKVESHVQE 420 SFTKTLICGI ILDDGSTCTR QPVKGRKRCH EHKGKRIRGN QK*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

LFLSYLSPSS PFPSLYRNCH RNNGGFISNF PETXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVVYL GKADNVRARL  180
QRYGRTGAHL SNISSSDDSS LQTGRSLFQD IFSQGFPIVY RWAPMQNEGD ALRTEAQLLS  240
TFDYAWNTIS NGTRRPDDIL QMLNKLASGT RTFSDVTKLL LPFTQRKVGI PIKSSKLPLT  300
DDKLDEADNG SYNILSRVFK FNRSRPRIVV QDTTSRAIHE NAKICGVILA DGSICQRPPV  360
EKRVRCAEHK GMRIKVSTAK AIRAPKLELE TIVGNAYRYQ NVSQDVEEPP QRKVESHVQE  420
SFTKTLICGI ILDDGSTCTR QPVKGRKRCH EHKGKRIRGN QK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31658

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147961	0.0	AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003625016.2	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A2K3NJ71	0.0	A0A2K3NJ71_TRIPR; Uncharacterized protein (Fragment)
STRING	XP_004493411.1	1e-180	(Cicer arietinum)
STRING	AES81234	1e-180	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	7e-59	effector of transcription2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31658