PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA31610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 273aa MW: 30160.6 Da PI: 9.8318 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.5e-14 | 153 | 193 | 3 | 47 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 y GVr ++ +g+++AeIr p++ + r++lg+f taeeAa a++ Tp57577_TGAC_v2_mRNA31610 153 YLGVRKRP-WGKYAAEIRNPYT---KERHWLGTFNTAEEAAIAYD 193 77******.**********865...5******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.7E-25 | 152 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-24 | 152 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-17 | 152 | 211 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.44 | 152 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 153 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.35E-24 | 153 | 209 | No hit | No description |
Pfam | PF00847 | 3.0E-7 | 154 | 193 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 175 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
LFTSRILFFI GIVNMNTAPN VWYNSTKYRL VFNLVYSHKK KSPFNTHHNT TQHHHPQSKS 60 KMNGVFSEIV QMLLLVVLLK ILVYLVCSML PVKAGPPEAA NGGPIASTAS GGGGGKNPYS 120 QNTKSNNPME NITPTPLIYK NPIRRTSRRS TMYLGVRKRP WGKYAAEIRN PYTKERHWLG 180 TFNTAEEAAI AYDFSSINIC GIDNARTNFH YPFVSHSQPP LSLLLPAPPQ PTQVLDAICM 240 LEMNVGFDGG DDESLVIASI LQTFSNSGSC SL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31610 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469561.1 | 3e-69 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | A0A072VNJ7 | 7e-68 | A0A072VNJ7_MEDTR; DNA-binding domain protein | ||||
STRING | XP_007143615.1 | 4e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14513 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12890.1 | 2e-24 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA31610 |