PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Trihelix | ||||||||
Protein Properties | Length: 378aa MW: 43188.7 Da PI: 4.3974 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.4 | 2.5e-15 | 132 | 219 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt++ + +L+e+ e+ +l+r++l+ W evs+k+ +e ++ers +qC++ ++++++rykk+k ++ + +s ++p+f Tp57577_TGAC_v2_mRNA31609 132 EWTEHATFVLLEIWGEKFLQLGRNSLRSEEWHEVSEKVsEELKIERSVEQCRSVLDKVKRRYKKEKSRMDEMgLGVNSCKWPFF 215 5*************************************8889************************9999885688889***** PP trihelix 83 dqle 86 ++++ Tp57577_TGAC_v2_mRNA31609 216 KRMD 219 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.5E-19 | 131 | 221 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEDDARYPSK GYPFRRKNPN LRQKHPIRNL QYHHYNDPED NNNIDEEFDD YNIDEDGIEN 60 GYIGNFEENK GFIGKKRKLR SGGSSSGGGS VSNYELVPRG KXXXXXXXXX XXXXXGGGGV 120 GGGGGGSSGS EEWTEHATFV LLEIWGEKFL QLGRNSLRSE EWHEVSEKVS EELKIERSVE 180 QCRSVLDKVK RRYKKEKSRM DEMGLGVNSC KWPFFKRMDM LMSSSARQEY GLACGVDSGE 240 YVFMNTRVYL NRSNGFDEMR DSPGESEASD DEEEDGDDDD LDEVDKEEEE ASYRVLADSI 300 QKFGKIYEKI ENTKRQQMME LEKMRLDFNR ELELQKKQIL ERAQAEISKI QEPGDDGHDE 360 EVEDGEETGT SADNLSE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31609 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202341 | 0.0 | AC202341.28 Medicago truncatula clone mth2-24i7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512963.1 | 1e-173 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2K3NE33 | 0.0 | A0A2K3NE33_TRIPR; Putative serine threonine-protein kinase kinX-like protein | ||||
STRING | XP_004512963.1 | 1e-173 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 2e-77 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31609 |