PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA31608

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 378aa MW: 43188.7 Da PI: 4.3974

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31608	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.5e-15	132	219	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt++ + +L+e+ e+ +l+r++l+ W evs+k+ +e ++ers +qC++ ++++++rykk+k ++ + +s ++p+f Tp57577_TGAC_v2_mRNA31608 132 EWTEHATFVLLEIWGEKFLQLGRNSLRSEEWHEVSEKVsEELKIERSVEQCRSVLDKVKRRYKKEKSRMDEMgLGVNSCKWPFF 215 5***********************************8889********************9999885688889* PP trihelix 83 dqle 86 ++++ Tp57577_TGAC_v2_mRNA31608 216 KRMD 219 *7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-19	131	221	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MEDDARYPSK GYPFRRKNPN LRQKHPIRNL QYHHYNDPED NNNIDEEFDD YNIDEDGIEN 60 GYIGNFEENK GFIGKKRKLR SGGSSSGGGS VSNYELVPRG KXXXXXXXXX XXXXXGGGGV 120 GGGGGGSSGS EEWTEHATFV LLEIWGEKFL QLGRNSLRSE EWHEVSEKVS EELKIERSVE 180 QCRSVLDKVK RRYKKEKSRM DEMGLGVNSC KWPFFKRMDM LMSSSARQEY GLACGVDSGE 240 YVFMNTRVYL NRSNGFDEMR DSPGESEASD DEEEDGDDDD LDEVDKEEEE ASYRVLADSI 300 QKFGKIYEKI ENTKRQQMME LEKMRLDFNR ELELQKKQIL ERAQAEISKI QEPGDDGHDE 360 EVEDGEETGT SADNLSE*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MEDDARYPSK GYPFRRKNPN LRQKHPIRNL QYHHYNDPED NNNIDEEFDD YNIDEDGIEN  60
GYIGNFEENK GFIGKKRKLR SGGSSSGGGS VSNYELVPRG KXXXXXXXXX XXXXXGGGGV  120
GGGGGGSSGS EEWTEHATFV LLEIWGEKFL QLGRNSLRSE EWHEVSEKVS EELKIERSVE  180
QCRSVLDKVK RRYKKEKSRM DEMGLGVNSC KWPFFKRMDM LMSSSARQEY GLACGVDSGE  240
YVFMNTRVYL NRSNGFDEMR DSPGESEASD DEEEDGDDDD LDEVDKEEEE ASYRVLADSI  300
QKFGKIYEKI ENTKRQQMME LEKMRLDFNR ELELQKKQIL ERAQAEISKI QEPGDDGHDE  360
EVEDGEETGT SADNLSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31608

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC202341	0.0	AC202341.28 Medicago truncatula clone mth2-24i7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512963.1	1e-173	trihelix transcription factor ASIL2
TrEMBL	A0A2K3NE33	0.0	A0A2K3NE33_TRIPR; Putative serine threonine-protein kinase kinX-like protein
STRING	XP_004512963.1	1e-173	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-77	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31608