PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31512
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SRS
Protein Properties Length: 355aa    MW: 38123.5 Da    PI: 7.7913
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31512genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.21.5e-661152834153
                     DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 
                                g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+++++++++++  ++s+r+re++++ ++  +
  Tp57577_TGAC_v2_mRNA31512 115 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQNQQHQ-FHSSRRHRENQNDPTTGGA 197
                                789****************************************************988776655.4444555555444444444 PP

                     DUF702  88 stklssaeskkeletss....................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqG 151
                                s +l+ +  + +++  +                    +P+e++s+avfrcv+vs++d ++e +aYqtav+igG vfkGiLydqG
  Tp57577_TGAC_v2_mRNA31512 198 SGSLAGSPIPITTTGGTsgslagspipitttglelgnFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQG 281
                                4443333333332222235566888999999999999*********************************************** PP

                     DUF702 152 le 153
                                le
  Tp57577_TGAC_v2_mRNA31512 282 LE 283
                                98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.1E-64116283IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-26118160IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.2E-23235282IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAGFFSLSSG RGKEEAREQQ QEENNNNNQF HFRNEEIYNK GFEIWPQQSS FHHQQQHQQN  60
INNFYSFGVG SSSRRNENTT SNNLHDDVSV SFSDESTRFG LTVIRSGGGG GLTGGGMNCQ  120
DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQQQLTSL QQQNQQHQFH  180
SSRRHRENQN DPTTGGASGS LAGSPIPITT TGGTSGSLAG SPIPITTTGL ELGNFPPELN  240
SPAVFRCVKV SAMDAQDERY AYQTAVNIGG RVFKGILYDQ GLEGNYTSAN ASGGGGGEGS  300
SGGGGGGGSG EGNLQNLITT TTTNVSNPFE YSSLYPAPLN AFMAGTQFFP PPRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31512
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4110321e-153AM411032.1 Trifolium pratense AFLP fragment rc0085.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589349.31e-145LOW QUALITY PROTEIN: protein SHI RELATED SEQUENCE 5
TrEMBLA0A2K3LMM61e-154A0A2K3LMM6_TRIPR; Uncharacterized protein (Fragment)
STRINGXP_004499211.11e-140(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.16e-55SHI-related sequence 5