PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA315
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21051.2 Da    PI: 6.0373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA315genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.31.1e-191355749
                             HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               rqvtfskRr+ ++ KA+ELS+LC+aevav+ fs+++k y +
  Tp57577_TGAC_v2_mRNA315 13 YMRQVTFSKRRTSLFNKANELSILCGAEVAVVAFSPRNKPYSF 55
                             679***********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-23158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.395159IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-14121IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-21272IPR002100Transcription factor, MADS-box
CDDcd001207.97E-25258No hitNo description
PfamPF003196.9E-221155IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-142136IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-143657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRRKIGIMK DPYMRQVTFS KRRTSLFNKA NELSILCGAE VAVVAFSPRN KPYSFGHPRV  60
DVVAVKYLQQ DPKSSYSQGD PSSDASNMEE LNLGLAQVLD QICEGEKEAK TRDEILKQNG  120
MTTLSELEEL RDSYKELQYW VKFCLNDLEI SEYMMLLAKE PVLGGLKQNL QKIRIEEKVD  180
FFLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA315
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.12e-80agamous-like MADS-box protein AGL29
TrEMBLA0A392MNA29e-94A0A392MNA2_9FABA; Agamous-like MADS-box protein AGL62-like
STRINGXP_004504539.13e-73(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-27AGAMOUS-like 29