PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 169aa MW: 18900.5 Da PI: 10.9079 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0012 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Tp57577_TGAC_v2_mRNA31359 38 FECTTCNRKFSSFQALGGHRASH 60 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 11.6 | 0.00084 | 88 | 108 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk Fs L H+r+H Tp57577_TGAC_v2_mRNA31359 88 CYICGKQFSIGQALGGHMRRH 108 99******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.346 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.64E-8 | 38 | 108 | No hit | No description |
Pfam | PF13912 | 1.8E-11 | 38 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.7 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.6E-9 | 86 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKRQRDERVG NIDLANCVIL LSHPKEAKHK KHFGPVDFEC TTCNRKFSSF QALGGHRASH 60 KKPKLESTKL KLQSQTLGLM NKPKIHGCYI CGKQFSIGQA LGGHMRRHRI ALNKGCCLVK 120 KNKVVGKVPI LKRSNSKRIM CLDLNLTPLQ NDLKLLFGNM APKVDSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31359 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468307.1 | 3e-98 | zinc finger protein ZAT11 | ||||
Swissprot | Q9SLD4 | 1e-42 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A072VJY7 | 7e-97 | A0A072VJY7_MEDTR; Cys2-His2 zinc finger transcription factor | ||||
STRING | XP_004495268.1 | 1e-94 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 6e-45 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31359 |