PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31349 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 139aa MW: 15995.2 Da PI: 8.7888 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.1 | 1.4e-18 | 55 | 139 | 1 | 76 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgk 75 +fY++YA+ vGFsvr s++ k+k+ ++ ++ +vCskeg++ee+k + + +++r+++ tr gCka+++ k++++gk Tp57577_TGAC_v2_mRNA31349 55 DFYKNYAHAVGFSVRSSSEIKEKDGVNVRWKYLVCSKEGFKEEKKIDtpkllvtenNLSKSRKKKLTRQGCKARIVFKRTDEGK 138 6******************************************99999*****998888999*****************99988 PP FAR1 76 w 76 + Tp57577_TGAC_v2_mRNA31349 139 Y 139 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-16 | 55 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MNAIMNNFYE MDSASPSKEF DDLENDTPEE WIPPCGNELK PVIGKVFDTL TQGVDFYKNY 60 AHAVGFSVRS SSEIKEKDGV NVRWKYLVCS KEGFKEEKKI DTPKLLVTEN NLSKSRKKKL 120 TRQGCKARIV FKRTDEGKY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31349 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024626623.1 | 6e-52 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A2Q1A1 | 6e-49 | A2Q1A1_MEDTR; FAR1; Zinc finger, SWIM-type |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15907 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 5e-12 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31349 |