PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3133
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 1005aa    MW: 111709 Da    PI: 6.2601
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3133genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.8e-40157234178
                               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                               +Cqve+C adls+ k+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Tp57577_TGAC_v2_mRNA3133 157 VCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNT 234
                               6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-32152219IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.795155232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-37156236IPR004333Transcription factor, SBP-box
PfamPF031108.9E-29158231IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.207.8E-8754890IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-9761889IPR020683Ankyrin repeat-containing domain
CDDcd002041.99E-8788889No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1005 aa     Download sequence    Send to blast
MEARLGGEGY HFYGVGGSSE LTSMGKRSRE WNLNDWRWDG DLFLASRVNP VPAEGMRVGQ  60
QFFPLGSGIS VAGGSSNTTS SSCSEEGDLE NSKRDKEGEK KRRVIVLEGD GLNEEAGALS  120
LNLAGQASPV VEREIATWDG MNGKKGRVAA GTPNRAVCQV EDCGADLSRG KDYHRRHKVC  180
EMHSKASRAL VGNAMQRFCQ QCSRFHILQE FDEGKRSCRR RLAGHNKRRR KTNTEAVPNG  240
SPTNDDQTSS YLLISLLKIL SNMHSDRSDQ ITDQDLLTHL LRSLASQNDE QGIRNLSNLL  300
REQENLTREG GSSRKSEMVS ALFSNGSQGS PTAITQHQTV SMNRMQQEMM HSHDVTAADH  360
HLISSIKPSI SNSPPASSEA RDSSAPVKMN NFDLNDIYID SDDGTEDLER LPVSTNLGTS  420
SVDYPWAQQD SHQSSPPQTS GNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNEFPLV  480
LKSQILDWLS HSPTDIESYI RPGCIVLTIY LRQAEAVWED LCCDLTSSLN KLLDVSDDPF  540
WRTGWVHIRV QHQMAFIFNG QVVIDTSLPF RSNNYSKIWT VSPIAVPASK RAQFSVKGVN  600
LMRPATRLMC ALEGKYMVCE DAHESTDHYS KELDELQCIQ FSCSVPVTNG RGFIEIEDQG  660
LSSSFFPFIV AEEDVCSEIC VLEPLLELSE TDQDIERTGK IKDKSQAMDF IHEMGWLLHR  720
SQLKSRMVHL NSSVDLIPLE RFTWLMEFSM DHDWCAVVKK LLNLLLDETV NKGDHPTLYQ  780
ALSEMGLLHR AVRKNSKQLV ELLLRYVPDK ALVDGDYQSF LFRPDAVGPA GLTPLHIAAG  840
KDGSEDVLEA LTNDPSMVGI EAWKSARDST GSTPEDYARL RGHYTYIHLV QKKINKRQGA  900
PHVVVEIPST PTESNTNPKQ NESSTSFEIG KAEVRRNQGN CKLCNTKISC RTAVGRSMVY  960
RPAMLSMVAI AAVCVCVALL FKSSPEVLYM FRPFRWESLD FGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30149231284squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193102RDKEGEKKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591325.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A2K3NRP90.0A0A2K3NRP9_TRIPR; Squamosa promoter-binding-like protein 1-like
STRINGAES615760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]