PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31296
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 471aa    MW: 53719.8 Da    PI: 6.8551
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31296genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1027.8e-3281333128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyW 83 
                                 G++F+Ptdeel+++yLk+k+ g+++ + + i++++++++ P++Lp k k+k++eke +fF++ d  + +  +r nr++k gyW
  Tp57577_TGAC_v2_mRNA31296   8 IGYKFDPTDEELINYYLKHKIFGDDFMV-SNIAHIHLLNFAPSELPvKlKMKSDEKEGFFFTCLDLMKMNkITRCNRKAKGGYW 90 
                                69***********************999.77***************535888889999999998876665278*********** PP

                        NAM  84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                k +gk + +++k +++++g kkt  fy+   +  ekt+Wv+hey++
  Tp57577_TGAC_v2_mRNA31296  91 KISGKGRIIKKKgTNNVIGRKKTVLFYT---SLHEKTNWVIHEYHA 133
                                *******9999866778**********3...34468********96 PP
2NAM134.85.6e-421903221128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk 79 
                                +p G+rFhPt+eelv +yL++k++g++  + + i+ev+++++ePw+Lp      k++++++ewyfF++ d ky+t++r  r+t+
  Tp57577_TGAC_v2_mRNA31296 190 MPIGYRFHPTEEELVGHYLEHKLAGNDSIV-SNITEVNLNSIEPWELPVmlalsKTTSDDSEWYFFTTDDLKYKTSTRCIRTTN 272
                                699************************666.78***************5478777777889*********************** PP

                        NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +gyWk+tg ++e++ k +++++g+kk++vfyk   ++ ekt+W++h+y++
  Tp57577_TGAC_v2_mRNA31296 273 AGYWKKTGITREIKIKgTNNVIGTKKIFVFYKHCGSHVEKTNWIIHQYHA 322
                                **************9967778************999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.4856153IPR003441NAC domain
SuperFamilySSF1019419.68E-367153IPR003441NAC domain
PfamPF023652.3E-209132IPR003441NAC domain
SuperFamilySSF1019413.53E-44189346IPR003441NAC domain
PROSITE profilePS5100544.083190347IPR003441NAC domain
PfamPF023651.0E-22191321IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MATTKSIIGY KFDPTDEELI NYYLKHKIFG DDFMVSNIAH IHLLNFAPSE LPVKLKMKSD  60
EKEGFFFTCL DLMKMNKITR CNRKAKGGYW KISGKGRIIK KKGTNNVIGR KKTVLFYTSL  120
HEKTNWVIHE YHANEAICPH NKTNLVLCRL MRKGEWVTHS SSHVSAADFE KQPMMDLDQD  180
NKTLHILGTM PIGYRFHPTE EELVGHYLEH KLAGNDSIVS NITEVNLNSI EPWELPVMLA  240
LSKTTSDDSE WYFFTTDDLK YKTSTRCIRT TNAGYWKKTG ITREIKIKGT NNVIGTKKIF  300
VFYKHCGSHV EKTNWIIHQY HAINVPDNKV YGLFNNRNFV LCRLMEKTEV VRDELMYDEG  360
ASNHVAAGAE LESIADLTPN VCGSPEVTMQ YNLLASPHED DYSFPEATNQ TYFEGLTSSN  420
AHFKTENSNA GFPFETDQEV KAYYNSFFDS DSAVGDVYIS YETSQNAPAT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-28934716165NO APICAL MERISTEM PROTEIN
1ut4_B2e-28934716165NO APICAL MERISTEM PROTEIN
1ut7_A2e-28934716165NO APICAL MERISTEM PROTEIN
1ut7_B2e-28934716165NO APICAL MERISTEM PROTEIN
3swm_A2e-28934719168NAC domain-containing protein 19
3swm_B2e-28934719168NAC domain-containing protein 19
3swm_C2e-28934719168NAC domain-containing protein 19
3swm_D2e-28934719168NAC domain-containing protein 19
3swp_A2e-28934719168NAC domain-containing protein 19
3swp_B2e-28934719168NAC domain-containing protein 19
3swp_C2e-28934719168NAC domain-containing protein 19
3swp_D2e-28934719168NAC domain-containing protein 19
4dul_A2e-28934716165NAC domain-containing protein 19
4dul_B2e-28934716165NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.12e-36NAC 014