PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 670aa MW: 73533 Da PI: 7.1723 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 328 | 384 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g Tp57577_TGAC_v2_mRNA31232 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 384 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 45.8 | 1.6e-14 | 429 | 478 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Tp57577_TGAC_v2_mRNA31232 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 478 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.07E-19 | 328 | 392 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 328 | 384 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-14 | 328 | 394 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-13 | 329 | 393 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.069 | 329 | 392 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-22 | 329 | 398 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 330 | 341 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.62E-26 | 427 | 488 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-18 | 427 | 488 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-19 | 428 | 486 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 428 | 492 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 428 | 486 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.4E-10 | 429 | 478 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-6 | 468 | 488 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MKSMNDSSSN SDDRNNNNNW LGFSLSPHIK IGDELSSSPL HNHYQQPSSA SNTVPTSFYF 60 SPSHFTNSAI CYGVPENANF HSPLTVMPLK SDGSLCIMEA LGRSQSQVMV SSSSSPKLED 120 FLGGATMGTH DEYVSHEREA MALSLDSIYY NGQQNADPHQ ANRDHSLELL SESFRQQTSS 180 HPYYAALGYH GMFQTPLEVV VESKENTNHV DVCSSQMPQN WVSSREYSSS ASLTLEQQMN 240 NGGAGSGAAD GGGGGSVGTV GCGELQSLSL SMSPGSQSSC VTAPSQISPT GTESVTMSMD 300 AKKRGAAKLG QKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG 360 RQGGYDMEEK AARAYDQAAL KYWGPSTHIN FPLENYQIQL EEMKNMTRQE YVAHLRRKSS 420 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGSN 480 AVTNFDISKY DVERIMASNT LLSGEHARRI KDNVPLIEYN NDTNVSSQNI GEAAQVRNNN 540 ENDSKWKMVS NSCDQKNAVN SSGSYKNSDF SMCLQDLVAG QQHVLDDSNK IGTHFSNPSS 600 LVTSLSSSRE ASPDHKTGPS LLFPKLPMES KIATNGVSSW FPSQVTNQMR PTSSINLSHF 660 PVFAAWNDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31232 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635770.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-160 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A072VCJ1 | 0.0 | A0A072VCJ1_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_004501498.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-131 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31232 |