PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GeBP | ||||||||
Protein Properties | Length: 259aa MW: 28826.6 Da PI: 9.9584 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 66.2 | 7.1e-21 | 46 | 129 | 5 | 96 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 r++se De+++L+G+ df +ktgk+ps++id f++fvk+s+ + v+++q+ Kir L++K++ +f k+hd+k+ Tp57577_TGAC_v2_mRNA30899 46 RIFSEGDELAILRGVADFLSKTGKDPSKNIDSFHDFVKNSLGAMVTNQQIKRKIRGLREKYESGD---------NFIKPHDKKA 120 9************************************************************8643.........47999***** PP DUF573 89 felskki.W 96 +el kki W Tp57577_TGAC_v2_mRNA30899 121 LELFKKIkW 129 999999855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.5E-18 | 46 | 127 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAPRKRLLIN NPPSVTTTTS ESSDDDKNDY IQLPCKETVS AAAGGRIFSE GDELAILRGV 60 ADFLSKTGKD PSKNIDSFHD FVKNSLGAMV TNQQIKRKIR GLREKYESGD NFIKPHDKKA 120 LELFKKIKWG NNGGNVAGEE NGKAVDVKSP KKDVNVKVKH VGSSSKNVGS GVDNNFILNE 180 IFRSRDAKGL PLNKDDGKRL NKDDGEKRLE MIGESRRAEM VHQWRQLHVA ELEVFVNRAQ 240 LVKDHTSYLL EELTKSTH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30899 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3NIQ1 | 1e-158 | A0A2K3NIQ1_TRIPR; Mediator-associated protein 1-like (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 1e-15 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30899 |