PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30811
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 225aa    MW: 24637.4 Da    PI: 9.3397
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30811genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.35.6e-38201832128
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 
                                ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++      
  Tp57577_TGAC_v2_mRNA30811  20 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFL--- 100
                                79**************************************************************88888666211111111... PP

                        TCP  86 ssg.........................................................kaaksaakskksqksaasalnlak 112
                                  +                                                         +               +++++l +
  Tp57577_TGAC_v2_mRNA30811 101 --PpspfilgkrlrsehdepvsiaaptappgiwrpdfaqlwsfaaaqpppevlsisphqqQ---------------HQHNSLFH 167
                                ..13334444555555566677778888888888999999998876555554444443221...............22222222 PP

                        TCP 113 esrakarararertre 128
                                +++++++++++ + ++
  Tp57577_TGAC_v2_mRNA30811 168 HQQQQQQQNQHHQHQQ 183
                                2222222222222211 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.3E-3426184IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2092680IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSNCKETTTT NAVEPTTNQT VKKPPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK  60
SDGQTIEWLL RQAEPSIIAA TGTGTTPASF SSLSEHKPFL PPSPFILGKR LRSEHDEPVS  120
IAAPTAPPGI WRPDFAQLWS FAAAQPPPEV LSISPHQQQH QHNSLFHHQQ QQQQQNQHHQ  180
HQQQGSMGEA SAARLGNYLP GHLNLLASLS GGNGNSGRGD DEDR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1609251e-118AC160925.39 Medicago truncatula clone mth2-176a22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498111.11e-117transcription factor TCP7-like
SwissprotQ9FMX23e-72TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2K3MSF81e-164A0A2K3MSF8_TRIPR; Transcription factor TCP7-like protein
STRINGXP_004498111.11e-116(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-50TCP family protein