PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 225aa MW: 24637.4 Da PI: 9.3397 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.3 | 5.6e-38 | 20 | 183 | 2 | 128 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasns 85 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ ++++ Tp57577_TGAC_v2_mRNA30811 20 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFL--- 100 79**************************************************************88888666211111111... PP TCP 86 ssg.........................................................kaaksaakskksqksaasalnlak 112 + + +++++l + Tp57577_TGAC_v2_mRNA30811 101 --PpspfilgkrlrsehdepvsiaaptappgiwrpdfaqlwsfaaaqpppevlsisphqqQ---------------HQHNSLFH 167 ..13334444555555566677778888888888999999998876555554444443221...............22222222 PP TCP 113 esrakarararertre 128 +++++++++++ + ++ Tp57577_TGAC_v2_mRNA30811 168 HQQQQQQQNQHHQHQQ 183 2222222222222211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.3E-34 | 26 | 184 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 26 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSNCKETTTT NAVEPTTNQT VKKPPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK 60 SDGQTIEWLL RQAEPSIIAA TGTGTTPASF SSLSEHKPFL PPSPFILGKR LRSEHDEPVS 120 IAAPTAPPGI WRPDFAQLWS FAAAQPPPEV LSISPHQQQH QHNSLFHHQQ QQQQQNQHHQ 180 HQQQGSMGEA SAARLGNYLP GHLNLLASLS GGNGNSGRGD DEDR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30811 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC160925 | 1e-118 | AC160925.39 Medicago truncatula clone mth2-176a22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498111.1 | 1e-117 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-72 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2K3MSF8 | 1e-164 | A0A2K3MSF8_TRIPR; Transcription factor TCP7-like protein | ||||
STRING | XP_004498111.1 | 1e-116 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-50 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30811 |