PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30803

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 74aa MW: 8555.07 Da PI: 10.6355

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30803	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.2	3.3e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n++ rqvtfskRr g++KK +ELSvLC+a++ +iifsstgkl+ y+s Tp57577_TGAC_v2_mRNA30803 9 KRIQNTTTRQVTFSKRRSGLIKKTHELSVLCEAKIGLIIFSSTGKLFQYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.9E-38	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.417	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.25E-35	2	59	No hit	No description
SuperFamily	SSF55455	1.96E-28	2	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-29	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRGKIEIKR IQNTTTRQVT FSKRRSGLIK KTHELSVLCE AKIGLIIFSS TGKLFQYCSE 60 PYRYVFIWLY SSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-21	1	67	1	67	MEF2C
5f28_B	5e-21	1	67	1	67	MEF2C
5f28_C	5e-21	1	67	1	67	MEF2C
5f28_D	5e-21	1	67	1	67	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30803

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028783789.1	2e-35	MADS-box protein FBP24
Swissprot	Q9ATE5	3e-31	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A1S2Y205	9e-34	A0A1S2Y205_CICAR; protein TRANSPARENT TESTA 16
STRING	XP_004498126.1	2e-34	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.3	8e-31	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30803

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]