PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30785
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 623aa    MW: 68519 Da    PI: 6.9988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30785genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.4e-09469517355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA30785 469 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 517
                                58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17464535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-11464521No hitNo description
PROSITE profilePS5088815.478466516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-17467534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6469517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10472522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MQTKDNSTLF ILHSLNHHHH GEKHFQKFNF LQQLTTNSPP YSLIKHETLM ETNLTNKGSE  60
TTQGVFPRGV SWSVREFGGE LGGELLKVEF LKVLFSMVMM IEGMQNEKWK WLNCVESTLR  120
SHRKEFASVY FVKEMSEREK FELESKEGSL DWRFVNATNL ANSSVDLVSM ENSMNLSRGD  180
LMMGSSSCSN SMVDSYSPNF LDLLTNSENL AGFCDVIGQS HVSSTNQDGI RKDGFSFARV  240
GCDDRALGMS WNLASSMMKR DAILPNGHGM FPQSLSQFPT DSGFIDAARM SCFSAGGFSD  300
MVNSCGIPQS MPLHVSRSVE HHGSDGSPLQ NDGRSDCPVM SPDEGKQAHG GCSNEVDRAE  360
SSGDDGVGNG SHDDSQMLDS TSGEPSIKGL KSKKRKRSRQ DGDSSDKATR TLELPTATAK  420
DNCESRKGKQ LTTSTAKASG KNAKQGSQAS DLPNEGYVHV RARRGQATNS HSLAERVRRE  480
KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPHVEFNMER  540
LLHKDILQHR PGPSSTLGFL TEMPMAFPPL LHPSQQGLIC ATLPNMANSS HLLGRTVQPQ  600
SAPLTGEFKE PNQVNPLQAA KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392397KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30785
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628711.10.0transcription factor bHLH49
TrEMBLA0A2K3PDS60.0A0A2K3PDS6_TRIPR; Transcription factor bHLH49-like protein
STRINGAET031870.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-84bHLH family protein