PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30760
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 765aa    MW: 87849.4 Da    PI: 6.3375
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30760genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.1e-2032120291
                       FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                 Y+e+A +vGFsvrk k+ +  ++++++  ++++Csk+g++++e +   +   +ra +rt+Cka+++ + +k+g+w+vtkl l+
  Tp57577_TGAC_v2_mRNA30760  32 LYQEHAFKVGFSVRKGKECYYdNEKKNTRLKDLYCSKQGFKNNEPDG--EVAYKRADSRTNCKAMVRFNVTKEGVWKVTKLILK 113
                                7**************9875542677778889************9988..88899****************************** PP

                       FAR1  85 HnHelap 91 
                                HnHe++p
  Tp57577_TGAC_v2_mRNA30760 114 HNHEFVP 120
                                ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1832120IPR004330FAR1 DNA binding domain
PfamPF105511.0E-28230323IPR018289MULE transposase domain
PfamPF044349.9E-8512543IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.101512548IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4523550IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MEINECEPIE TDEPKDIFLG QVVNSKEEAY DLYQEHAFKV GFSVRKGKEC YYDNEKKNTR  60
LKDLYCSKQG FKNNEPDGEV AYKRADSRTN CKAMVRFNVT KEGVWKVTKL ILKHNHEFVP  120
LHQRYLLRSM RNLSNLKEDR IKSMVNDAIR VGGFDKHGVM LKDMHNYVST EKLKFIEAGD  180
AQSLLNHLQN RQAQDSMFCY SVQLDQESRL TNVFWRDGKS VVDYNCFGDV VIFDTTYRDN  240
KYNLICAPFV GLNHHLQNIM FGCALLFDES EVSFAWLFKT FLESMGNQQP KTIFTAHDPA  300
MAKAIGEVMP NACHRLCLWH IAKVAPSHLD SLISDQKFQS LFSKCMGDCD SEEEFQRTWD  360
EMMNVYKLQD HQWLSNMYEI HHKWSTAYSK SVFSAGIKSC QRIESTNNVL DEIAGKTTTL  420
TQFLLAFEKM LKKWRRLEVE EEFKNSQSTP PLVINISETL RHVSTVYTHK VFNLFLNEYL  480
EGTGGSTSIE IGQSDNVSNH EVLLNHKPNK KYTVTFDSSN MKINCSCCKF DYMGILCSHA  540
LRIYNIKGIL RIPDQYFLKR WSKNARSVIY EHISRGMGED STSNLGINDD DAGIPYRNAI  600
MKSFYSLVLE SQDSKEAQNI MWKLLDIGVE RVQKGVGKGN LTSDVETMET NFNENEESCM  660
DEPRRLVYAS LNELPQGDNY LAINVGFLQV AIPVKGIDND AEYGEPEEPQ PDEAQIEEPQ  720
QPPRRRPQQR PRQPRRDAAN EGYGGGPSDM SLLTQYGNHR AVPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723730RRRPQQRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30760
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1518770.0CU151877.3 M.truncatula DNA sequence from clone MTH2-170E16 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629447.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3N4Y40.0A0A2K3N4Y4_TRIPR; Protein FAR1-related sequence 5-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5