PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3076 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22198.2 Da PI: 5.1902 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131 | 5e-41 | 33 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+C+++ Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA ar+rdPvyG++g i +lq Tp57577_TGAC_v2_mRNA3076 33 PCAACKILRRRCSAEkCVLAPYFPPNDPAKFTIAHRVFGASNIIKFLQELPEAQRADAVTSMVYEASARVRDPVYGCAGAICQLQ 117 7***********9766********************************************************************* PP DUF260 85 qqleqlkaelallkee 100 +q+++l+a+la+ ++e Tp57577_TGAC_v2_mRNA3076 118 KQVNELQAQLAKSQAE 133 ***********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.697 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-41 | 33 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MESIISDSSS PTSSSNSLQL IAQVPSQVVV MSPCAACKIL RRRCSAEKCV LAPYFPPNDP 60 AKFTIAHRVF GASNIIKFLQ ELPEAQRADA VTSMVYEASA RVRDPVYGCA GAICQLQKQV 120 NELQAQLAKS QAEVVNMQLQ QANLVALICM EMSQSPQESP QQISLDNNNF IQSPNHNSGH 180 QIGLNFFDEN TSLNSLWEPL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 25 | 136 | 3 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 25 | 136 | 3 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3076 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149268 | 5e-93 | AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606493.1 | 1e-110 | LOB domain-containing protein 11 | ||||
Swissprot | Q9LQR0 | 4e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 8e-74 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | G7JRG8 | 1e-109 | G7JRG8_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES88690 | 1e-109 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-73 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3076 |