PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30757

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 698aa MW: 80438.9 Da PI: 8.6164

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30757	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	17	97	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 A ++ F +++ ks + +++ ++ C + g+ +++kk ++ ++ + ++gC +l + d++w++t ++ +HnHel Tp57577_TGAC_v2_mRNA30757 17 ALKIKFAIVIGKSDNG-SDKRKQYFRLDCERGGRYVSTNKK--LKSDQTGTRKCGCPFRLCGYCHADKTWHLTVVNGKHNHELD 97 6778899999998877.566678899*****99998888..888999999****999999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-5	17	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MATPDRDELI RWAREIALKI KFAIVIGKSD NGSDKRKQYF RLDCERGGRY VSTNKKLKSD 60 QTGTRKCGCP FRLCGYCHAD KTWHLTVVNG KHNHELDKAV EGHLIVGHLK PEERQCMEEM 120 SRNLVPPKNI MSTLKDRDPN NKTTTKQLYN LSHRLKLKMR ASMTEMQHLS KRLVENGDLA 180 LMNAVSEVFP TSAAMVCRFH VKKNVSSKMK EIVKIKNGEN EKQTDVWDQI TDAFNDVLES 240 PTEKEYADNV MVFRELCARW PKFLHYVEET VLDTDKERVV NAWVDQHMHM GNHTTNRAES 300 CHGVLKGYLK DGEFGRSMSV AEHRYDDDPL YAFLFYKISI KAMDHIYDEA NRVEECGMDS 360 KKCGCVMRRT YGLPCACLIA KKIKNNKLIR LDEIHPQWKK LCFEDEPAPG DVADDYACLV 420 EWKAIQFDFF LSLLERLKTA DVSVKNDIRN QLRLIAYPET TSVKPPLQKA KTKGARKKKS 480 VRVTRSTSRD KSRWEHVDDH IAATQASQSK PTKSKPSTSQ TVPEVPKELV ISTLTPAPPA 540 PPEIPFINHM PKFMHSFIED IIDVEGDGYC GYRVVALHQK GNQQDFELIG LNMERELRLH 600 KESYVELFDT EHYKYVTDEL FPPPRRSKHV FATKDKWFTF SDMGYVVATH FQRVVVXXXX 660 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSDSA*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MATPDRDELI RWAREIALKI KFAIVIGKSD NGSDKRKQYF RLDCERGGRY VSTNKKLKSD  60
QTGTRKCGCP FRLCGYCHAD KTWHLTVVNG KHNHELDKAV EGHLIVGHLK PEERQCMEEM  120
SRNLVPPKNI MSTLKDRDPN NKTTTKQLYN LSHRLKLKMR ASMTEMQHLS KRLVENGDLA  180
LMNAVSEVFP TSAAMVCRFH VKKNVSSKMK EIVKIKNGEN EKQTDVWDQI TDAFNDVLES  240
PTEKEYADNV MVFRELCARW PKFLHYVEET VLDTDKERVV NAWVDQHMHM GNHTTNRAES  300
CHGVLKGYLK DGEFGRSMSV AEHRYDDDPL YAFLFYKISI KAMDHIYDEA NRVEECGMDS  360
KKCGCVMRRT YGLPCACLIA KKIKNNKLIR LDEIHPQWKK LCFEDEPAPG DVADDYACLV  420
EWKAIQFDFF LSLLERLKTA DVSVKNDIRN QLRLIAYPET TSVKPPLQKA KTKGARKKKS  480
VRVTRSTSRD KSRWEHVDDH IAATQASQSK PTKSKPSTSQ TVPEVPKELV ISTLTPAPPA  540
PPEIPFINHM PKFMHSFIED IIDVEGDGYC GYRVVALHQK GNQQDFELIG LNMERELRLH  600
KESYVELFDT EHYKYVTDEL FPPPRRSKHV FATKDKWFTF SDMGYVVATH FQRVVVXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSDSA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30757

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2Z6N4L2	0.0	A0A2Z6N4L2_TRISU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30757