PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA30731

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 587aa MW: 68318.7 Da PI: 7.882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA30731	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.3e-21	51	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fYn YA++ Fs rksk +++ +n+ei++++fvC+++g+ree+ + + +r+ r+ tr+ C+ak+ v+ ++ +++w+v ++++ Tp57577_TGAC_v2_mRNA30731 51 FYNWYARMNEFSARKSKVRRN-KNKEIIQQRFVCYRQGFREEKFGNdKICKREARVDTRCRCDAKFSVHINSvSQRWYVWDFNN 133 ****************999.7777************987745678999************************** PP FAR1 84 eHnHela 90 HnH l Tp57577_TGAC_v2_mRNA30731 134 VHNHMLL 140 **995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-18	51	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-17	241	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MEFGDIQSDM KCIVGFAIGG MEDMGRLDLK NLSASDLMKF YFPNVGVTFT FYNWYARMNE 60 FSARKSKVRR NKNKEIIQQR FVCYRQGFRE EKFGNDKICK REARVDTRCR CDAKFSVHIN 120 SVSQRWYVWD FNNVHNHMLL DEDFIGFLPG HRGMDDDDIL QMKIFRKSII RTSQAYGSFA 180 NHYGGRSKGS DSIAALAFLR SLMNDDPTMF MRHTIDEQGR LEHLFWSDGR SQLDYSIFGD 240 VLAFDATYKK NKYLCPLVVF SGVNHHNQTV VFATAIVANE VEDTYMWLLE QLMEVMKGKM 300 PKSKCMLCDY EIVDFERKWN EMVKECGVED SDWVLELYEK KDMWAMTHIR GKFFGGFRTT 360 SRCEGLNAQI GKYVNYQNNL FEFLQHYKQC IEYLRFKELE ADFASLHVGV MVYLNMVEIP 420 SYLVLDRWTK NVKDSISCSK LVQGTSWDSM TICRYKALNQ RLRDVNGLGC KSVEDYLDTM 480 DVLNAHFERL KIKHDIQFEE VSNDANRKER FVQNPKVAKT KGRGGGRGTS RRQTKRGRRS 540 VHCAFCGNVG HNKTTCEVRR KVNGVDDEDE TNNSVTDEDL YSKDDE*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MEFGDIQSDM KCIVGFAIGG MEDMGRLDLK NLSASDLMKF YFPNVGVTFT FYNWYARMNE  60
FSARKSKVRR NKNKEIIQQR FVCYRQGFRE EKFGNDKICK REARVDTRCR CDAKFSVHIN  120
SVSQRWYVWD FNNVHNHMLL DEDFIGFLPG HRGMDDDDIL QMKIFRKSII RTSQAYGSFA  180
NHYGGRSKGS DSIAALAFLR SLMNDDPTMF MRHTIDEQGR LEHLFWSDGR SQLDYSIFGD  240
VLAFDATYKK NKYLCPLVVF SGVNHHNQTV VFATAIVANE VEDTYMWLLE QLMEVMKGKM  300
PKSKCMLCDY EIVDFERKWN EMVKECGVED SDWVLELYEK KDMWAMTHIR GKFFGGFRTT  360
SRCEGLNAQI GKYVNYQNNL FEFLQHYKQC IEYLRFKELE ADFASLHVGV MVYLNMVEIP  420
SYLVLDRWTK NVKDSISCSK LVQGTSWDSM TICRYKALNQ RLRDVNGLGC KSVEDYLDTM  480
DVLNAHFERL KIKHDIQFEE VSNDANRKER FVQNPKVAKT KGRGGGRGTS RRQTKRGRRS  540
VHCAFCGNVG HNKTTCEVRR KVNGVDDEDE TNNSVTDEDL YSKDDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA30731

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3PJ56	0.0	A0A2K3PJ56_TRIPR; Protein FAR1-related sequence 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-46	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA30731