PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30545
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 66aa    MW: 7279.24 Da    PI: 4.7725
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30545genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.61.6e-121966249
                       GRAS  2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteAL 49
                               ++lL+ecA++v+sg+ ++a+  L+ +s+++sp+g+++qR+++yf eAL
  Tp57577_TGAC_v2_mRNA30545 19 ISLLIECAKCVASGSIKNADIGLEYISQISSPYGSAVQRVVTYFSEAL 66
                               579********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.347166IPR005202Transcription factor GRAS
PfamPF035145.6E-101966IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
SPYQWLRELR CDSYSSNPIS LLIECAKCVA SGSIKNADIG LEYISQISSP YGSAVQRVVT  60
YFSEAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9673047e-59CT967304.5 M.truncatula DNA sequence from clone MTH2-36C8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513385.13e-34scarecrow-like protein 3
TrEMBLA0A2Z6MW565e-35A0A2Z6MW56_TRISU; Uncharacterized protein
STRINGXP_004513385.11e-33(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-14scarecrow-like 3