PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30449
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 854aa    MW: 93346.8 Da    PI: 4.0605
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30449genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.96.4e-12701751454
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                R   +++ + +Lee F+  + p+ ++r e++++l+L+ +qV++WF N+R +
  Tp57577_TGAC_v2_mRNA30449 701 RVYNNHQRISRLEEIFQTVQRPNYKQRLEISEELKLNLKQVTNWFSNKRKR 751
                                555677889****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.123695755IPR001356Homeobox domain
SuperFamilySSF466891.76E-11697757IPR009057Homeodomain-like
SMARTSM003893.4E-5697759IPR001356Homeobox domain
CDDcd000864.71E-10700751No hitNo description
PfamPF000464.1E-9701751IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-10706753IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MDNEGERERV DVGVSEESVK NFEGEEVFEE AMDPIKRFDD LGGDAVVGED DVVTDTVSEL  60
PSDLVDEVAD KKEESDTFRE SVGVDDEEEL EVIANQEVRE DQQGQLYNKE AEGGVSCDES  120
YSIKDDFSGG KELSDSNADG SVVFQEGRDL VNGESGLLSE KGEGEDLEYV TPRQNGGLIS  180
ENGSTDKVDF AVEEFRTESG SDEEMKNKDA DGGYLKEDGL DPDLRDDKIE EERNDSGDPS  240
SEIQDGTDDL EHHHEIFVEM EDETIGTDAI HKDTNGKETG VSDSQSTESK VYSNHETKDD  300
DAESNSEHLE TIGETGGSSP AVNESEVVET AGSSSLSENS LANEMPTVQA TAADSEVGST  360
KVYQSQISTE ENQGNYENLS VVDRSEVIET GGSSPTLDER KVTETVVNSS ISENSSANEI  420
PTVQTTAADS EEGSAKVYQS QISNEENQGN SEISSVVDRS EVIETLRSSP ALDEVKVAET  480
VGSSPPSENS FANELPTVQA TAADSVKETS KVYPSKISNA ENQGNYEKSS VVGEPEKIPE  540
NNTKEKQTTQ IIKEQNSELD SSSGKSVAPG TPLDRPVGLG PVAPLLRPTP RVVQQPRVNN  600
TKEKQTTQIT KEHNSELDSS SGKSVPTSTP LVRPAGLGSA APLLEPSPRV VQQPRVNNTV  660
SNVQSPKMED SSTGEAEERI DQRLDSTMES TVIVESNNEQ RVYNNHQRIS RLEEIFQTVQ  720
RPNYKQRLEI SEELKLNLKQ VTNWFSNKRK RIQDANKKEV SAALRAEKEK ILKENMKMKE  780
TQNNVSCESC NAYSQILKQL QLENELLKEE NEKMSKLLTS YEKKQEVSLE LKLGLPTSST  840
NGDLVVGESV SLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30449
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500736.11e-115translocase of chloroplast 120, chloroplastic
TrEMBLA0A2K3P3E30.0A0A2K3P3E3_TRIPR; Translocase of chloroplast 132 chloroplastic-like protein
STRINGXP_004500736.11e-114(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.17e-15homeodomain GLABROUS 9