PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30253
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 375aa    MW: 41835.3 Da    PI: 9.2931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30253genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-1294146147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 
                                rg W + Ed +l+++v+++G+ +W++Ia+++          t+k+c++rw++ 
  Tp57577_TGAC_v2_mRNA30253  94 RGHWRPAEDAKLKELVAEYGPQNWNLIAEHLDgrsvflILITGKSCRLRWFNQ 146
                                899*****************************66666633589*******996 PP
2Myb_DNA-binding58.12e-18153196146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                +g +++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Tp57577_TGAC_v2_mRNA30253 153 KGTFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 196
                                799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.98789147IPR017930Myb domain
SMARTSM007176.6E-993149IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-2594194IPR009057Homeodomain-like
PfamPF002491.3E-1294146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2495154IPR009057Homeodomain-like
CDDcd001671.03E-1197145No hitNo description
PROSITE profilePS5129427.29148202IPR017930Myb domain
SMARTSM007177.1E-16152200IPR001005SANT/Myb domain
PfamPF002494.4E-15153195IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-21155200IPR009057Homeodomain-like
CDDcd001671.11E-7164195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMSSQNFNNG HITDMALFPL APIPHSSHSL TNPEMGLQIF RPSLFQSKEM KETKEEDVYF  60
GIHSKNLSLK LGDEEVEEKS SVSVKIGYSK LCSRGHWRPA EDAKLKELVA EYGPQNWNLI  120
AEHLDGRSVF LILITGKSCR LRWFNQLDPR INKGTFSEEE EERLLAAHKM YGNKWAMIAR  180
LFPGRTDNAV KNHWHVIMAR RHREQCSVYR RRKPVFESIS KGLKLSLSNN AASDSTISST  240
IDGNASARTN LSLTPSSANL SPQLFHKLVT PVPNHQGHGS LIMGKSRENV VATRDASFDK  300
YFGASKKQEQ VEKLKVIDVV QSNFSDSNSE VSASESVTTN RSNISISGES ENIGAKNFNM  360
LPFIDFLGVG ALHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32942017107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574721e-121AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624741.10.0transcription factor MYB52
TrEMBLA0A2Z6M0690.0A0A2Z6M069_TRISU; Uncharacterized protein
STRINGAES809590.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-67myb domain protein 56