PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA30230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 158aa MW: 18302.5 Da PI: 7.0601 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.8 | 2.8e-21 | 91 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k Tp57577_TGAC_v2_mRNA30230 91 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 146 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.85E-20 | 80 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 85 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 88 | 148 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 89 | 152 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-19 | 91 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.85E-17 | 91 | 149 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 123 | 146 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MFGDCQVMST MGGGNVVVNS ESLFSSPIHN PNFNFMSTMP FQPFSSSMKE EDGMLRGKEE 60 IMDQSGSGSE QVEDKSGNEQ EITNEQETTK KKRYHRHTAR QIQEMEALFK ECPHPDDKQR 120 LKLSHDLGLK PRQVKFWFQN RRTQMKAQQD RSDNVILR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30230 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT485796 | 5e-65 | CT485796.1 Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612811.1 | 1e-102 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_024639712.1 | 1e-102 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 2e-46 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A2K3P3U0 | 1e-108 | A0A2K3P3U0_TRIPR; Homeobox-leucine zipper protein ROC3-like | ||||
STRING | AES95769 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18826 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G46880.1 | 3e-38 | homeobox-7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA30230 |