PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3016 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Trihelix | ||||||||
Protein Properties | Length: 201aa MW: 21975.1 Da PI: 8.0829 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 34.2 | 6.4e-11 | 43 | 92 | 1 | 44 |
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergfe 44 rWt+qe+l+Li+++++ e+r++ g+ + +p+W+ vs++++++g+ Tp57577_TGAC_v2_mRNA3016 43 RWTRQEILVLIQGKSDAESRFKPGRngsgfgSSEPKWALVSSYCKKHGVF 92 8*********************986666777****************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04640 | 2.0E-26 | 99 | 172 | IPR006734 | Protein of unknown function DUF597 |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MALDQPSLPS NPNSIDGESG NGTPPSSAVN GGEDGKPTAR LPRWTRQEIL VLIQGKSDAE 60 SRFKPGRNGS GFGSSEPKWA LVSSYCKKHG VFDGIVQVRR YVYHDVVRLG DLEKLIDCSN 120 IQAYTVNGAK VVFLNERVQS RSCKGSSNAN SCCSCDRILQ EPFHFCSLSC KVFFVSFIFV 180 SLLYCTVLFP ILTGLDCLYF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003621623.1 | 1e-50 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 4e-24 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A2K3NBP3 | 2e-59 | A0A2K3NBP3_TRIPR; Uncharacterized protein | ||||
STRING | AES77841 | 5e-50 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 2e-26 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3016 |
Publications ? help Back to Top | |||
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