PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 696aa    MW: 80053.5 Da    PI: 7.5797
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30094genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.62.3e-1471156291
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                +Y +YA++ GF + +++sk+   +g+     + Cs +g+r+  kk+     ++ ++ + +C+a++ v++ +dg ++ +++ l+H
  Tp57577_TGAC_v2_mRNA30094  71 YYTKYANQEGFAIMTRTSKRG-ADGKLFYFILACSSKGYRRIGKKN---PVTNCSSGKQKCEARIIVNLCEDGAYCFKSITLNH 150
                                9*************9999887.8888****************9999...88899999*************************** PP

                       FAR1  86 nHelap 91 
                                nHel+p
  Tp57577_TGAC_v2_mRNA30094 151 NHELNP 156
                                ***975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1171156IPR004330FAR1 DNA binding domain
PfamPF105517.1E-31275369IPR018289MULE transposase domain
PROSITE profilePS509669.223560596IPR007527Zinc finger, SWIM-type
PfamPF044349.3E-4569593IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-5571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MPIRAQKTRV MEDRCNSLIP LDIETNRCEE VLRHCRPKEC KPVNHNLDDC DVVPTPQDWM  60
KFNSEDEVRS YYTKYANQEG FAIMTRTSKR GADGKLFYFI LACSSKGYRR IGKKNPVTNC  120
SSGKQKCEAR IIVNLCEDGA YCFKSITLNH NHELNPNQVK SRNSADTNKR LKRTLDPNDQ  180
AEKGGKKSFG SLVVKPEVNE NLAFCEQGFR NYIQKEKRLI GEDGDGHALH KYFMRMQEQD  240
SNFFYAIDFD DCFCVKNIFW ADGRSRAAYK LFGDVVKFDS TYLSNQYKIP LTFLVGVNHH  300
GQSILFGCGL LSSEDTQSFV WLFQSWLVCM SGVQPKGIIT DQRKAVQSAI GIVFPSTRHS  360
WCLSHIMKKL PQNIGGHTEY DTLSYHLQRV VYDSFTTNEF ETAWKMIVEE FDLEDNEWLR  420
ELYLERHRWV PTFIRCSFWA GMSATQLGAI PRGFFVEIIS VQTSLKQFVD KYDIALQAKV  480
EKEFEADFLS YSSTLECATN SPIERQFQSA YTHAKFLEVQ KEFIGKADCN VCIAHVEGSI  540
CHYNVIEDTM IGDKPKETMF QVTFDRVNCD VKCICNMFEF KGILCRHSLG ILSMERVKEI  600
PCKYILNRWM KSMKRRHAYV KTSYAAKQLQ PQIQKFDLLC KQFESVAEVA SEFEETSSFV  660
KNTICDLKEK LESWASCLRN SSDMAVPISC AVEGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028761545.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028761546.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028761547.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028761548.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2K3MW890.0A0A2K3MW89_TRIPR; Protein FAR1-related sequence 6-like
STRINGGLYMA19G32051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.11e-111FAR1-related sequence 4