PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 696aa MW: 80053.5 Da PI: 7.5797 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.6 | 2.3e-14 | 71 | 156 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +Y +YA++ GF + +++sk+ +g+ + Cs +g+r+ kk+ ++ ++ + +C+a++ v++ +dg ++ +++ l+H Tp57577_TGAC_v2_mRNA30094 71 YYTKYANQEGFAIMTRTSKRG-ADGKLFYFILACSSKGYRRIGKKN---PVTNCSSGKQKCEARIIVNLCEDGAYCFKSITLNH 150 9*************9999887.8888****************9999...88899999*************************** PP FAR1 86 nHelap 91 nHel+p Tp57577_TGAC_v2_mRNA30094 151 NHELNP 156 ***975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-11 | 71 | 156 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.1E-31 | 275 | 369 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.223 | 560 | 596 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.3E-4 | 569 | 593 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-5 | 571 | 598 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MPIRAQKTRV MEDRCNSLIP LDIETNRCEE VLRHCRPKEC KPVNHNLDDC DVVPTPQDWM 60 KFNSEDEVRS YYTKYANQEG FAIMTRTSKR GADGKLFYFI LACSSKGYRR IGKKNPVTNC 120 SSGKQKCEAR IIVNLCEDGA YCFKSITLNH NHELNPNQVK SRNSADTNKR LKRTLDPNDQ 180 AEKGGKKSFG SLVVKPEVNE NLAFCEQGFR NYIQKEKRLI GEDGDGHALH KYFMRMQEQD 240 SNFFYAIDFD DCFCVKNIFW ADGRSRAAYK LFGDVVKFDS TYLSNQYKIP LTFLVGVNHH 300 GQSILFGCGL LSSEDTQSFV WLFQSWLVCM SGVQPKGIIT DQRKAVQSAI GIVFPSTRHS 360 WCLSHIMKKL PQNIGGHTEY DTLSYHLQRV VYDSFTTNEF ETAWKMIVEE FDLEDNEWLR 420 ELYLERHRWV PTFIRCSFWA GMSATQLGAI PRGFFVEIIS VQTSLKQFVD KYDIALQAKV 480 EKEFEADFLS YSSTLECATN SPIERQFQSA YTHAKFLEVQ KEFIGKADCN VCIAHVEGSI 540 CHYNVIEDTM IGDKPKETMF QVTFDRVNCD VKCICNMFEF KGILCRHSLG ILSMERVKEI 600 PCKYILNRWM KSMKRRHAYV KTSYAAKQLQ PQIQKFDLLC KQFESVAEVA SEFEETSSFV 660 KNTICDLKEK LESWASCLRN SSDMAVPISC AVEGT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028761545.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_028761546.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_028761547.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
Refseq | XP_028761548.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A2K3MW89 | 0.0 | A0A2K3MW89_TRIPR; Protein FAR1-related sequence 6-like | ||||
STRING | GLYMA19G32051.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 1e-111 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30094 |