PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30050
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 367aa    MW: 40858.6 Da    PI: 7.7515
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30050genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.71.2e-4171148178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +C v+gC+adls+++eyh+rh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+q+
  Tp57577_TGAC_v2_mRNA30050  71 ICSVDGCDADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDDVKRSCRKRLDGHNKRRRKPQP 148
                                5**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-3364133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.84769146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.19E-3970151IPR004333Transcription factor, SBP-box
PfamPF031101.7E-3172145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDWDWKEFAW DPSGLEELKN EGDSVDLRLG EASDSMEKSV QETGMEDSKA VSSFSGSLKR  60
SRSQNGSQNM ICSVDGCDAD LSDCREYHKR HRVCEKHSKT PVVLVGGKQQ RFCQQCSRFH  120
SLAEFDDVKR SCRKRLDGHN KRRRKPQPPS LFMAAEKFMY NYKGPRILHF GSPQAYVNVN  180
PIVRNIWPAT SITEAESGYD HHRFLYRIDK HKQDKGHPHW QEILPKSGDV NKAVPGIPIN  240
QPIRSAVDSS AGGKGGRKLS SDSKPGSFDS GCALYLLSTL QTQSSELSLM QSSINNSPTE  300
SSSGTVHFDA MNEYSCSGKA KDKPNNGSVF VLDGNTTNLH CNGMLQMGPN SLVENENSLT  360
LPFFWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27711451084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128145KRSCRKRLDGHNKRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA30050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447951.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024627057.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2K3PCR30.0A0A2K3PCR3_TRIPR; Squamosa promoter-binding-like protein 16-like
STRINGGLYMA19G26390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-43SBP family protein