PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29940
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 320aa    MW: 35534.4 Da    PI: 8.131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29940genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33153211159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYGqK vk+s++prsYYrCt+a+C vkk+vers++d ++v++tYeg+H+h+
  Tp57577_TGAC_v2_mRNA29940 153 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTASCGVKKRVERSSDDSSIVVTTYEGQHTHP 211
                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-35138213IPR003657WRKY domain
SuperFamilySSF1182901.44E-29145213IPR003657WRKY domain
PROSITE profilePS5081132.133148213IPR003657WRKY domain
SMARTSM007744.6E-39153212IPR003657WRKY domain
PfamPF031066.0E-27154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MITSTTIFYY PIGFFLPXXX XXXXXXXXXX XXXXXXXXXX LPTVATTTTH HPLPSPASSS  60
VPDSSGTLNT PANSTSISSS SNEATINDSL EQNRSKVSRN EHDAEVEEDV NGGRGDEQDQ  120
DKSKKQLKAK KKNQKKEREP RFAFMTKSEV DHLDDGYRWR KYGQKAVKNS PYPRSYYRCT  180
TASCGVKKRV ERSSDDSSIV VTTYEGQHTH PCPATSRHPN LSFVNAQPTA SGSHSHFLLP  240
TLLYNNPTTN IITTTTTTPP SSSHVGASSG TYLNTSSFGG FVHDQGINHI REALLRDNGL  300
LQDIFQMKKE ENDSFKDQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-29143214778Probable WRKY transcription factor 4
2lex_A2e-29143214778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1359131e-162BT135913.1 Medicago truncatula clone JCVI-FLMt-13I16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594714.21e-108probable WRKY transcription factor 48
SwissprotO229009e-51WRK23_ARATH; WRKY transcription factor 23
TrEMBLG7IMS41e-106G7IMS4_MEDTR; Putative transcription factor WRKY family
TrEMBLI3S6161e-106I3S616_MEDTR; Uncharacterized protein
STRINGAES649651e-107(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]