PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 51aa MW: 5882.67 Da PI: 9.1565 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35 | 2.8e-11 | 31 | 51 | 1 | 21 |
---SS-EEEEEEE--TT-SS- CS WRKY 1 ldDgynWrKYGqKevkgsefp 21 ldD y+WrKYGqK+vkg+++p Tp57577_TGAC_v2_mRNA29739 31 LDDCYRWRKYGQKVVKGNPNP 51 58*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.0E-14 | 16 | 51 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-9 | 23 | 51 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.975 | 26 | 51 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-6 | 32 | 51 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
KLESYAEMNG ATRAIREPRV VVQTTSEVDI LDDCYRWRKY GQKVVKGNPN P |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29739 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 3e-51 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458833.1 | 1e-25 | probable WRKY transcription factor 2 | ||||
Refseq | XP_024633691.1 | 1e-25 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 4e-23 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A072V433 | 3e-24 | A0A072V433_MEDTR; Putative transcription factor WRKY family | ||||
TrEMBL | A0A2U8UG52 | 3e-24 | A0A2U8UG52_TRIRP; Putative WRKY transcription factor 2 (Fragment) | ||||
TrEMBL | A0A371EY41 | 3e-24 | A0A371EY41_MUCPR; Putative WRKY transcription factor 2 (Fragment) | ||||
STRING | GLYMA04G12830.2 | 6e-25 | (Glycine max) | ||||
STRING | GLYMA06G47880.3 | 6e-25 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25024 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 2e-25 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29739 |
Publications ? help Back to Top | |||
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