PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29698
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 311aa    MW: 35816 Da    PI: 5.3802
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29698genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-22131191259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                dDg++WrKYGqK++ +s+++r YYrCt++   +C+++k+v+r +e p   ++tY g+H+++
  Tp57577_TGAC_v2_mRNA29698 131 DDGHQWRKYGQKTILNSKYSRDYYRCTHKldqRCEATKQVQRVEEKPASYKTTYYGHHTCK 191
                                8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-24116192IPR003657WRKY domain
PROSITE profilePS5081118.429125188IPR003657WRKY domain
SuperFamilySSF1182906.41E-23126191IPR003657WRKY domain
SMARTSM007743.2E-30130192IPR003657WRKY domain
PfamPF031061.1E-22131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEIKLEKEEG YYILEMDEAM EELVRGREYA NKLGQVLLLA VNHDDDELAM AATPLLFAQH  60
LLNNILNSFT NTLILLKKNH QMQLKRDFSF ITPTKSHEDN SQDTSTLAGR GSYKRRKTTE  120
TWEKISESPI DDGHQWRKYG QKTILNSKYS RDYYRCTHKL DQRCEATKQV QRVEEKPASY  180
KTTYYGHHTC KNTDEIIFEP TTPSHTNSSS VFLSFNNAYP TPNKQDCPFL SSHHLVLDCK  240
EEEVVIPSPS EDELLSSPLD STSTLSSSTK LESDDDDHKD MMMMMYGLLY DSVDQLDHHD  300
RSFHPFLGLL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22130191869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003626678.11e-94probable WRKY transcription factor 70
TrEMBLA0A2K3NG770.0A0A2K3NG77_TRIPR; WRKY transcription factor
STRINGAET011544e-94(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-27WRKY DNA-binding protein 70