PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29429
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 293aa    MW: 33517.2 Da    PI: 9.7368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29429genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.2e-06165184120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++Cp C+k+F+r  nLk H+
  Tp57577_TGAC_v2_mRNA29429 165 FSCPVCSKTFTRFNNLKMHM 184
                                89*****************9 PP
2zf-C2H2163.4e-05267288122
                                EEETTTTEEESSHHHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                y C +CgksFs k + k+H + 
  Tp57577_TGAC_v2_mRNA29429 267 YLCRKCGKSFSVKGDWKSHEKD 288
                                56*****************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-6159187No hitNo description
Gene3DG3DSA:3.30.160.606.1E-7165184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.075165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.72165192IPR007087Zinc finger, C2H2
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-5247287No hitNo description
Gene3DG3DSA:3.30.160.602.2E-5265286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035543267287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224267292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVQLHAPHPN HNQYSSSSTQ QTNNMFDIQS HNQPLSSSLT INPPSPPLRE ALPLINKLSL  60
INHNHQQQQN EPSNTTIEQE EYKRLYKRVL ERHGDESNTL SLQIGLPRIN SSSSSNFGSR  120
MVSNCIEMAE KEAPNMIYEK PLDKLNKGQY WIPTPSQIPI GPTQFSCPVC SKTFTRFNNL  180
KMHMWGHGPQ NRIVADSLKG TQPTAMLRLP CFCCAQGCKY NIDHSRAKHL KDFRSCKYNI  240
DHSKAKHLKD FRSLQTHYKR MHCIKPYLCR KCGKSFSVKG DWKSHEKDCG KI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1357701e-106BT135770.1 Medicago truncatula clone JCVI-FLMt-15M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510958.11e-115zinc finger protein WIP2-like
RefseqXP_004510959.11e-115zinc finger protein WIP2-like
TrEMBLA0A1S2YWC01e-114A0A1S2YWC0_CICAR; zinc finger protein WIP2-like
STRINGXP_004510958.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.16e-69C2H2 family protein