PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 299aa MW: 33179.9 Da PI: 6.3494 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.3e-31 | 142 | 199 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver+++dp+++++tY+geH h Tp57577_TGAC_v2_mRNA29242 142 SDIWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERKKSDPTMFIVTYTGEHSH 199 79*************************998***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-31 | 130 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.327 | 136 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 138 | 201 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 143 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEADWDLYAV IRPYTTITSS SSSTTTTTTI ATPSTPSSSG FETSTSCNFF SLYPAEQSIQ 60 VLPLETKSSI EELHDLCKPF FLKPQPLSSN SFSYSSPSPK SPHILQPKQH HHHAVSATTP 120 RSKRRKIQHK KVCEVKAENL SSDIWAWRKY GQKPIKGSPY PRGYYRCSST KGCPARKQVE 180 RKKSDPTMFI VTYTGEHSHL APTHRNSLAG STRQKPLSPK TITAEDSSQL FAKQVSPPIS 240 GAEEETGTPL STKSDSKEDL EDLMNDDDDV ENEFELSDMV VSDDFFEGLD ELEGFTSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-19 | 130 | 203 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-19 | 130 | 203 | 6 | 80 | Disease resistance protein RRS1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29242 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027336872.1 | 1e-113 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A2Z6MSC5 | 1e-122 | A0A2Z6MSC5_TRISU; Uncharacterized protein (Fragment) | ||||
STRING | XP_004510691.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 7e-64 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29242 |