PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29178
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 364aa    MW: 41300.8 Da    PI: 7.8296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29178genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5351411129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.........kvkaeekewyfFskrdkkyatgkrk 74 
                                lppGfrFhPtdeel+++yL+ k+++++++  ++++ vd++k+ePwdLp +         k++ +ekewyfFs rd+ky+tg r+
  Tp57577_TGAC_v2_mRNA29178   5 LPPGFRFHPTDEELITHYLTMKISDSSFTS-KAVAVVDLNKSEPWDLPgNnytylfcscKASMGEKEWYFFSVRDRKYPTGLRT 87 
                                79*************************999.88***************548999999876667999****************** PP

                        NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                nrat+sgyWk+tgkdke+++ +g lvg+kktLvfykgrap+gek++Wvmheyrle
  Tp57577_TGAC_v2_mRNA29178  88 NRATESGYWKTTGKDKEIFR-GGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 141
                                ********************.********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-573186IPR003441NAC domain
PROSITE profilePS5100556.0565187IPR003441NAC domain
PfamPF023651.5E-286140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLTMKISDS SFTSKAVAVV DLNKSEPWDL PGNNYTYLFC  60
SCKASMGEKE WYFFSVRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRGGV LVGMKKTLVF  120
YKGRAPRGEK SNWVMHEYRL ENKHHIRTSK LGIDILLCFF XXXXXXXXXX XXXXXXXXXV  180
VCRVFQKSIA TKKPQQTSSS QPESPCDTAS MVNEFGDVEL PNLNGFTNSS SSCGFTNIIS  240
GQTFNTNHDL TNNVNTNMNL TMNWPSSSEI PSLNWPSNLL NPNNISVNSL LLKALQLRNY  300
QQQREVAATN HFVPYMPQQG VISHHLGNDL SNNSNDLSAS SSKVLECMPQ HQQEQPFNLD  360
SIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-48415819163NAC domain-containing protein 19
3swm_B8e-48415819163NAC domain-containing protein 19
3swm_C8e-48415819163NAC domain-containing protein 19
3swm_D8e-48415819163NAC domain-containing protein 19
3swp_A8e-48415819163NAC domain-containing protein 19
3swp_B8e-48415819163NAC domain-containing protein 19
3swp_C8e-48415819163NAC domain-containing protein 19
3swp_D8e-48415819163NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29178
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465630.0AC146563.33 Medicago truncatula chromosome 6 clone mth2-15b10, complete sequence.
GenBankAC1862000.0AC186200.30 Medicago truncatula chromosome 6 clone mth2-78n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003620480.10.0protein CUP-SHAPED COTYLEDON 1
SwissprotQ9FLJ21e-72NC100_ARATH; NAC domain-containing protein 100
TrEMBLG7KN390.0G7KN39_MEDTR; NAC transcription factor-like protein
STRINGAES766980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.17e-89NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]