PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GeBP | ||||||||
Protein Properties | Length: 266aa MW: 30557.4 Da PI: 9.6352 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 51.8 | 2.2e-16 | 91 | 179 | 2 | 96 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkk..sisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 ++ r++seeD++v+L+Gl df +kt k+p ++ +f+ f+++ s ++ +sq+ Kir LK+Kf+k++ f+ Tp57577_TGAC_v2_mRNA29174 91 KSGRVFSEEDDLVILRGLADFISKTRKDPLKNAAEFHYFMREekSFRSDLRNSQIKRKIRTLKDKFEKRR---------IFTVL 165 6789************************************97115566899***************8654.........47889 PP DUF573 84 hdqkifels.kkiW 96 hd+k+f+l k+iW Tp57577_TGAC_v2_mRNA29174 166 HDKKAFKLFnKIIW 179 99999998615567 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.4E-13 | 94 | 177 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MASKNHYVQL PSESQKPVAD SEPNPQPQSR SSAQAQTSLT SGKKRDVEDK NANGNTSKRL 60 KKKKETVFAA AGGGSGEEKN DCMEEKKSKK KSGRVFSEED DLVILRGLAD FISKTRKDPL 120 KNAAEFHYFM REEKSFRSDL RNSQIKRKIR TLKDKFEKRR IFTVLHDKKA FKLFNKIIWT 180 NNDENEAAEE NQNEVESSLG YILNEIFRCD VDMALDWNDA KKGLESTEES SRAEMEEKWR 240 KLHIEEMNLV VTQTQYAKDR VRLGL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 63 | KKRDVEDKNANGNTSKRLKKKK |
2 | 58 | 64 | RLKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29174 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3LT84 | 0.0 | A0A2K3LT84_TRIPR; Mediator-associated protein 1-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 2e-11 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29174 |