PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29124
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 386aa    MW: 42526.2 Da    PI: 7.8867
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29124genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.34.1e-061374655
                               S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                   Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                               +ft+ +++e+e+      n  p ++    LA+k            ++ +qV +WFqN+R+  
  Tp57577_TGAC_v2_mRNA29124 13 RFTQPEVTEMEAILSDhnNAMPAKDVLDALADKFsespnrkgkiTVQMKQVWNWFQNKRYAI 74
                               588888888888887434888999999999999999999999889999***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-9477IPR009057Homeodomain-like
SMARTSM003890.0078781IPR001356Homeobox domain
PROSITE profilePS500718.9561377IPR001356Homeobox domain
CDDcd000860.005941375No hitNo description
Gene3DG3DSA:1.10.10.601.0E-61381IPR009057Homeodomain-like
PfamPF167192.0E-40129255IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQPEVT EMEAILSDHN NAMPAKDVLD ALADKFSESP NRKGKITVQM  60
KQVWNWFQNK RYAIRAKSSK TPAKLNITPM PRVDLAPGRI MAQPTASPIP APSASAQTTA  120
KVAPENSVME FEAKSGRDGA WYDVANFLSY RHLESSDPEV LVRFAGFGSE EDEWINVQKN  180
VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY  240
DHDQSEEIVP LRKVCRRPET DYRLHQLHAV NDAAPADQQK ISLDHPTNVH GIRVISSSET  300
VQKQQQQIAN IHIVTPVLQT NVSIPKPPPQ SMNVDPMKAE TKADVQAGIS VPPGFAPLAA  360
GIITTGSITS SIIPEVSTQN KAEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-461292594134SHH1 SAWADEE
4iur_B3e-461292594134SHH1 SAWADEE
4iut_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-461292594134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2368080.0AB236808.1 Trifolium pratense RNA for hypothetical protein, complete cds, clone: C2056.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628534.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-147SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLG7LDQ20.0G7LDQ2_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAET030100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-131sequence-specific DNA binding transcription factors;sequence-specific DNA binding