PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29115
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 434aa    MW: 47643.5 Da    PI: 6.1492
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29115genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.8e-10343401563
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+  +  l++++
  Tp57577_TGAC_v2_mRNA29115 343 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQN 401
                                9********************************************99988776666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.1E-18339403IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.749341404IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-11343398No hitNo description
PfamPF001705.4E-9343397IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-11343394No hitNo description
CDDcd147035.88E-25344393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MGDSEDGNNE MLQRLHSSSA SSFMKQQQLN NHMEQLSIPQ FNSSQMRTVG RNQHHNQRAG  60
MPPSHPHQIP PISPYSQIPV SRTTQMSSHN TSPTPSHTRS LSQPSFFSLD SLPPLSPCSF  120
RESSDNNNNA DVSMEDRDSS PPLIPLRGRE IGKPNSSVVK REFEHSNVEE KKSLSPEGEV  180
VDDLFSAYMN LDNIDAINSS GTDDKNVAVD NNNRDDLDSR ASGTKTNGGG DSSDNEAESS  240
VNESGDSMQR REGMKRSAGG DIAPTSRHYR SVSMDSFIGK LNFNDESFKL PPSPGGLVSP  300
GNSGDGNSAA FSLEFGNGEF SGPELKKIMA NEKLAEIAMA DPKRAKRILA NRQSAARSKE  360
RKMRYISELE HKVQTLQTEA TTLSAQLTLL QRDSVGLTNQ NSELKFRLQS MEQQAKLRDG  420
IFVTLFYLSF LNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0530410.0BT053041.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-O-20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607083.10.0probable transcription factor PosF21
RefseqXP_004494977.10.0probable transcription factor PosF21
TrEMBLA0A2K3NS700.0A0A2K3NS70_TRIPR; BZIP transcription factor
STRINGXP_004494977.10.0(Cicer arietinum)
STRINGAES892800.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.37e-86bZIP family protein