PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29109
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 332aa    MW: 35930.4 Da    PI: 9.5836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29109genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-1358102147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r +WT +E+e++++a +++  + Wk+I + +g  +t  q++s+ qky
  Tp57577_TGAC_v2_mRNA29109  58 RESWTDQEHEKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 102
                                789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1752108IPR009057Homeodomain-like
PROSITE profilePS5129415.48653107IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-756108IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-1856105IPR006447Myb domain, plants
SMARTSM007175.9E-1157105IPR001005SANT/Myb domain
PfamPF002495.2E-1158102IPR001005SANT/Myb domain
CDDcd001671.99E-860103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVSVNPNPAQ GFHFFDPSTM GLPGVNNLPP PPPSHTSAAA TEDPSKKIRK PYTITKSRES  60
WTDQEHEKFL EALQLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKSG TSEHVPPPRP  120
KRKAAHPYPQ KAPKNAPTAS QVMGPLQSSA AFVDPAYIYS TDSSSVLGTP VTSLPLSSWN  180
HNAAPPASVP QVATDDTGWT GSGQAVPLNC CYSSSNESAR AAGPSSKGIN QGNLGKPVKV  240
MPDFAQVYNF IGSVFDPNST NHLHRLKQMD PINVETALLL MRNLSINLTS PEFEDHKRLL  300
SSYDPDGEKA KFANPSSKSV TVKSENAVLS A*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684810.0EF468481.1 Medicago truncatula MYB transcription factor MYB40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510747.10.0protein REVEILLE 3
SwissprotC0SVG51e-114RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A2Z6M5H90.0A0A2Z6M5H9_TRISU; Uncharacterized protein
STRINGXP_004510747.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-100MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]