PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA29083

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 334aa MW: 37896.4 Da PI: 9.5741

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA29083	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.5	5.4e-21	43	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +W+ +e+laLi+ +r+++ +l+rg+lk+++W+ev++++ +++p+qC++k+e+l+kry+ + +++++ s+ s + Tp57577_TGAC_v2_mRNA29083 43 CWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVsqrcPNASPSKTPVQCRHKMEKLRKRYRTEIQRARSLpLSRFNSAW 126 7*******************************999966656667799*********************97799999 PP trihelix 80 pyfdqle 86 ++f+ ++ Tp57577_TGAC_v2_mRNA29083 127 VHFKLMD 133 ****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-20	42	135	No hit	No description
PROSITE profile	PS50090	6.168	44	104	IPR017877	Myb-like domain
SMART	SM00595	1.3E-9	51	140	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MMVFSNLVSK VRDRVVSTNR RPPSSPSSTP YPSXXXXXLP PPCWSPDETL ALIDSYRDKW 60 YSLGRGNLKA THWQEVADAV SQRCPNASPS KTPVQCRHKM EKLRKRYRTE IQRARSLPLS 120 RFNSAWVHFK LMDSMEKGPS PVKSENNDTD SDDDDEEEDR EQDLYMDIKN GHGSNTRSIN 180 RLYKNGFGGV SGGGFGGGFR IRYPPAQPES KFFPDQNQKY NPNLNQNYGT PPTASTTKGM 240 GNNRERDPLG EVVTAIKVLG DGFVRMEQMK MEMAREIEAM RMEMEMKRTE MILESQQRIV 300 EAFAKAVSDD SSNNNNNNKM KPINKRIPSP QQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA29083

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458224.2	1e-157	trihelix transcription factor ASIL1
TrEMBL	A0A2K3P9G6	0.0	A0A2K3P9G6_TRIPR; Uncharacterized protein
STRING	XP_004508343.1	1e-148	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-62	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA29083