PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 22747.9 Da PI: 9.0943 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.3 | 6.5e-21 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+n++ qv fskRrng++ KA+EL +LC+a va+iifs++gk++ + Tp57577_TGAC_v2_mRNA29038 16 KKISNERSMQVAFSKRRNGLFQKAYELFTLCGAYVALIIFSPSGKVFSF 64 68********************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.5E-29 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.721 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.73E-35 | 9 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-26 | 9 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-21 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-23 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-21 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-21 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSGGKKTRGR QKIEIKKISN ERSMQVAFSK RRNGLFQKAY ELFTLCGAYV ALIIFSPSGK 60 VFSFGNPDLY TVIDRYFSRV PPVNNNIRQF IEGFPSTNMR DLNAQLTQAN DALDREKKRG 120 DDLSHICKMI EDPSWWASPI DEMNKDQLEL LKKALEELNK NVAEPADRLE ILGAPAQTQQ 180 AQMSPPHVFQ NPMGGGGGEN GPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_B | 1e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_C | 1e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
6byy_D | 1e-16 | 9 | 82 | 2 | 75 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29038 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496799.1 | 1e-84 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3NHW4 | 1e-118 | A0A2K3NHW4_TRIPR; Agamous-like mads-box protein agl62-like | ||||
STRING | XP_004496799.1 | 5e-84 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-39 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29038 |