PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28977
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 426aa    MW: 46070.5 Da    PI: 6.5064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28977genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH339.9e-11323425
                               ---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                                lCr+f+r G C+yGdrC+F H
  Tp57577_TGAC_v2_mRNA28977  3 DLCRNFQR-GSCQYGDRCRFVH 23
                               59******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0047225IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-8325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MKDLCRNFQR GSCQYGDRCR FVHQQQRKSN NAFGGQQNTT NNPFGFGSAS PSASAPNNNN  60
PFGFGTQNTS HLNAPPRSDS KPNQFQPFEN KWTRSSSKPQ NGPPRQSDNN SQAVNHKCTD  120
PEVCKRQIVE DFQQEKPLWI LTCYGHCKGA PCDILGDISY EELRAAAYED ARNGTSLPVI  180
VEKERTILKS KLVEFDKLLS EPYKMPLNSS LGANANTFSP ATQNYQSNGA NANTFSPATQ  240
NYQSNGANVN AFSPATQNYQ ANGAIANAFL PATQNNGPLA VSSFSQLGAS LNTGFERPSG  300
PQMTTPAQPS TTFGNGGNIF GSNTQNIFGS GISGAQSNPF STPVEFTMFP GSTSQFQQPS  360
TAFNNTSSTT MLPTSAVQLN TSQVENVSVD ESVWLKEKWD PGEIPEVAPP DRFIQDVIGL  420
QSIIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28977
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505582.10.0zinc finger CCCH domain-containing protein 16
TrEMBLA0A2K3NWA00.0A0A2K3NWA0_TRIPR; Zinc finger CCCH domain-containing protein 16-like (Fragment)
STRINGXP_004505582.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-72C3H family protein