PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28971
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ARR-B
Protein Properties Length: 360aa    MW: 40895.7 Da    PI: 6.1881
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.65.6e-08213233121
                    G2-like   1 kprlrWtpeLHerFveaveqL 21 
                                k+r+ WtpeLH++Fv+av +L
  Tp57577_TGAC_v2_mRNA28971 213 KTRITWTPELHKKFVRAVMEL 233
                                68****************999 PP
2Response_reg55.43.5e-19201271108
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl +d + ++++++++++ + +y +v++++++++al+ll ek+  +Dl+l+  +mp+m+ +e+l++ +++  ++p+i++ a ++
  Tp57577_TGAC_v2_mRNA28971  20 VLMIDHDINLLNAFEKICFQFHY-SVKTCSKASDALNLLMEKKnsFDLVLIEAKMPDMNSYEFLQHVTQHI-NIPVIMMCADNT 101
                                7889999999*************.***************777777************************99.************ PP

                                HHHHHHHHHTTESEEEESS--HHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelv 108
                                 + +++a++ Ga d+  Kp  ++ + 
  Tp57577_TGAC_v2_mRNA28971 102 RSAVKKAIDDGACDYWIKPLTENLIQ 127
                                *******************8776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-2617168IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-2617151No hitNo description
SMARTSM004483.3E-1318130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.53619134IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-1520128IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.62E-1721134No hitNo description
Gene3DG3DSA:1.10.10.603.8E-7211238IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MALSIKKELF PQQFSTKIRV LMIDHDINLL NAFEKICFQF HYSVKTCSKA SDALNLLMEK  60
KNSFDLVLIE AKMPDMNSYE FLQHVTQHIN IPVIMMCADN TRSAVKKAID DGACDYWIKP  120
LTENLIQNMW QHVARKIWKQ NKNLKLSDEL EVEVGMRKEE RYDSNLLLID PKIGVTDDSN  180
LPLIDPRIGV IDTSVKQESV ETNNVKPESS TKKTRITWTP ELHKKFVRAV MELNVDTAAA  240
VNFYQTEFEE ETSSASINQH NHIGFETNSI INPSFINTLN LHFPNPHVRN MFLAPPPGII  300
SHQIPMTQPL PMIFDNSISS CGVSHFCAAD NISDTNSNTT RLEEPQSTIY ASTKDHPFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6MDV11e-114A0A2Z6MDV1_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1563334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-39response regulator 14