PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28891
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 762aa    MW: 87619.8 Da    PI: 8.7816
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28891genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.69.4e-1446131190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY +YA+  GF  ++++s+k  ++g+     + Cs+eg+r ++      + +t +++  +C  k+++k+ kd+ w+++k+e +
  Tp57577_TGAC_v2_mRNA28891  46 SFYGKYASIKGFGWKIRTSRKG-EDGKLNYLMLSCSREGRRGSKIPC---TLKTLPTKVKNCPSKITIKLAKDELWYIKKFEPN 125
                                59****************9998.8888**************999877...7889999999************************ PP

                       FAR1  85 HnHela 90 
                                H+H+++
  Tp57577_TGAC_v2_mRNA28891 126 HSHTIS 131
                                ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-1146132IPR004330FAR1 DNA binding domain
PfamPF105511.9E-36252346IPR018289MULE transposase domain
PROSITE profilePS509669.507535573IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-4548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MDSTNSMDTC VGFDGEASGV DSYNGEQESW EPATGMSFSS IDEVKSFYGK YASIKGFGWK  60
IRTSRKGEDG KLNYLMLSCS REGRRGSKIP CTLKTLPTKV KNCPSKITIK LAKDELWYIK  120
KFEPNHSHTI SPTKSRLFKA NKNLSMHVKR TIHINDDAGV RINKTFQTLV RDAGGYENVA  180
FCERDVRNFV NKERRVIGKD GDGKALISYF CQMREQNTNF FYDIDLDDDF HVRNVFWADA  240
RSRAAYESFG DVVTFDTTYL TNKYDMPFAA FVGVNHHGQS TLLGCGLLSA EDTELFVWLF  300
QSWLRCMLGK APAGIVTDQC KAMQNAIELV FPTTRHRWCL WHIMKKIPEK LSRYDEYKNI  360
TFAMKESVYD TITLTEFEEK WCSFVNKFEL EHNVWLSGLY KECHRWVPIM LKKYFWAGMS  420
TTQRSESIHA FFDGYINSTT TLHQFVKQYD NALRSRAEKE FEADFQSMDT IIPCGSNSLI  480
EKQFQGEYTH AKFKEVQVEF RAKMNCVPSL KTEEGNLATY HVLEEMLVGD RTKDRIVKVV  540
FDRGNHDVSC ECSLFEFRGI LCRHVLCVCT QERVKNMPLK YVLVRWSKNV KRKHSYIKTS  600
YSVTELKPQM DRFENLCKHF YEVAEVAADF EDATKALHER LHEFKSNLLC MVATSNNVNK  660
SSNNDSNPNN ITRRNENVIV EIRSPLRVTR RGRPPLNRKI SAVEKVVQKS KKRRTDKRGD  720
KLTTKVNVVT DGVVNVGGNA SFTDLLTSEI DFTGSSQFST N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28891
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642224.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6M8U90.0A0A2Z6M8U9_TRISU; Uncharacterized protein
STRINGGLYMA11G13523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-126FAR1 family protein