PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28824
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 312aa    MW: 35584.8 Da    PI: 10.1628
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28824genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.45.2e-13291061496
                                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                                 +  +p+kf++++g     s  + ++ ++g  W+v+   +k  g+++++kGWk+F +   L++g  v+Fk+ +  s+f  +v +
  Tp57577_TGAC_v2_mRNA28824  29 FLQKIPNKFTKSYGVG--LSNPVLIKPPDGTNWKVYW--KKVNGEIWFEKGWKSFTQNYSLQQGCLVLFKYRKGtSNF--NVII 106
                                3348*********644..55569999***********..999999*************************98655777..5544 PP
2B348.12.1e-15220311197
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ff++l++++ l +g++++p      ++ +ke   + ++ +   rsW++kl  +  +++  l++GW++Fv++ gL+ gD+++F+l
  Tp57577_TGAC_v2_mRNA28824 220 FFTILIKPYQLVKGQMCVPSLKG-VIE-NKE---KHVMLQIGKRSWNLKLLCSDDKNGRRLSAGWSKFVSESGLQPGDVCIFEL 298
                                88999999999999999997653.222.222...457788899*******8855555556************************ PP

                                -SSSEE..EEEEE CS
                         B3  85 dgrsefelvvkvf 97 
                                +++++  ++v+vf
  Tp57577_TGAC_v2_mRNA28824 299 INKKDLVFKVHVF 311
                                *988887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.51E-1211107No hitNo description
SuperFamilySSF1019361.28E-1511109IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-812110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-1712110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13916110IPR003340B3 DNA binding domain
PfamPF023621.2E-1032105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-16213311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16214311IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-15220311No hitNo description
PROSITE profilePS5086311.885220311IPR003340B3 DNA binding domain
PfamPF023621.1E-12220311IPR003340B3 DNA binding domain
SMARTSM010192.9E-7220309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAKRNATLSV RFFKIILQTN LQTLGLFNFL QKIPNKFTKS YGVGLSNPVL IKPPDGTNWK  60
VYWKKVNGEI WFEKGWKSFT QNYSLQQGCL VLFKYRKGTS NFNVIILGQN ALEIEYDPSS  120
YTDDDKNENV GDSDDESVKI LDEKNNSTID HSDDESVEIL DEWPKRKKNK QRSPIGRSPR  180
PHKKVRGETE NTTKSTSSLN WPKEAKAQKV AAKFNSSNPF FTILIKPYQL VKGQMCVPSL  240
KGVIENKEKH VMLQIGKRSW NLKLLCSDDK NGRRLSAGWS KFVSESGLQP GDVCIFELIN  300
KKDLVFKVHV F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28824
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600453.11e-133B3 domain-containing transcription factor VRN1
TrEMBLA0A2K3L3E51e-142A0A2K3L3E5_TRIPR; B3 domain-containing protein
STRINGAES707041e-133(Medicago truncatula)
STRINGAES858321e-133(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein