PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 136aa MW: 16079.4 Da PI: 10.2859 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.7 | 3.4e-17 | 9 | 93 | 46 | 128 |
NAM 46 dLpkkvkaeekewyfFskrdkkyatgkrknr.a....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122 + v++e + ++fF+k+ k+y++++rk++ + + +W++tgk+++++ ++ + g kk++v+y + k+ekt+Wv Tp57577_TGAC_v2_mRNA28810 9 N----VSQEGSATHFFHKAIKAYNSDNRKRQrIfdqdFGDLRWHKTGKTRPIFL-DEIQRGYKKIMVLYitPTNGGKTEKTNWV 87 3....34566789**********9988777634443333567************.999***********6534667778***** PP NAM 123 mheyrl 128 +h+y++ Tp57577_TGAC_v2_mRNA28810 88 VHQYHI 93 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.822 | 1 | 112 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-18 | 12 | 112 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-6 | 17 | 93 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MVLMNNPNNV SQEGSATHFF HKAIKAYNSD NRKRQRIFDQ DFGDLRWHKT GKTRPIFLDE 60 IQRGYKKIMV LYITPTNGGK TEKTNWVVHQ YHIGRKENEK EGEYVISKIF YRQQQSKLGI 120 KKKLEYAFFM EQLCS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28810 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028768664.1 | 3e-53 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 4e-45 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A392PPX2 | 4e-62 | A0A392PPX2_9FABA; NAC domain-containing protein 8-like (Fragment) | ||||
STRING | GLYMA20G32690.2 | 9e-52 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-47 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28810 |