PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HB-other | ||||||||
Protein Properties | Length: 131aa MW: 15520.3 Da PI: 10.6876 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.1 | 2.3e-11 | 7 | 44 | 19 | 56 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 F+ + p++++r+e+Ak+l+L+++qVk+WF +R k k Tp57577_TGAC_v2_mRNA28779 7 FQTLQQPNRKQRREIAKELDLNKQQVKNWFAYKRRKVK 44 9999******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 1.48E-5 | 6 | 44 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 6 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-8 | 7 | 44 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-9 | 7 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.017 | 7 | 46 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MCHAIIFQTL QQPNRKQRRE IAKELDLNKQ QVKNWFAYKR RKVKVAKQRE VCATLRTENQ 60 RISEMNKMMK DALKNIVLCK SCRKSQILKE LRLENQQLKE RIEKMSKLLS MYEEKQEVSL 120 ELKLGPPTSS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28779 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7IMI7 | 3e-24 | G7IMI7_MEDTR; Homeobox KN domain protein | ||||
STRING | AES64823 | 5e-25 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23029 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 8e-17 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28779 |